MidgeBase gene description page [Pn.02541]
Outline
| Gene ID | Pn.02541 |
| Type | Protein coding gene |
| Scaffold | PnScaf2185 |
| Start | 26380 |
| End | 27087 |
| Direction | + |
Sequence
Transcript: 585 (bp)
ATGGAGACAATAAAATGCGTTGTAGTAGGCGACGGAGCCGTTGGCAAAACGTGCCTCTTGATTTCATACACGACCAACAAATTCCCGTCCGAATACGTTCCGACCGTCTTCGACAACTACGCGGTGACGGTGATGGTCGGCGGCGAGCCTTACACGCTCGGGCTTTTCGATACGGCCGGTCAGGAGGACTACGATCGCTTGAGGCCACTGTCGTATCCACAGACCGACGTGTTTCTCGTTTGCTTCTCAGTCATCAGTCCCAGCTCTTTTGAAAATGTCAAGGAAAAGGCGAGGGCGTGTGCTTGGTTGCCTGAAATTAAGCACTACGGCAAGATGGTGCCCTTTCTTCTGGTCGGCACGCAGTGCGATTTGAGGGACGAACCCAACACTCTGGAGAAGTTGGCGAAGAACAAGTTGAAGCCGCTGTCGTACGAGCAAGGCGAGAAATTAGCGAAAGAAATGAAGGCCGCGAAATACGTTGAGTGCTCAGCATTGACACAAAAAGGACTGAAAGACGTTTTTGATGAAGCGATTTTGGCGACATTTGACACGGGCAAGACTAGAAGAGGTGGTTGTAATATTTTA
Protein: 195 (aa)
METIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMVGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVISPSSFENVKEKARACAWLPEIKHYGKMVPFLLVGTQCDLRDEPNTLEKLAKNKLKPLSYEQGEKLAKEMKAAKYVECSALTQKGLKDVFDEAILATFDTGKTRRGGCNIL
| Type | Start | End | Length |
| CDS |
26380 |
26557 |
178 |
| CDS |
26628 |
26752 |
125 |
| CDS |
26803 |
27084 |
282 |
| intron |
26558 |
26627 |
70 |
| intron |
26753 |
26802 |
50 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002011584 |
GI11109 [Drosophila mojavensis] gb|EDW05574.1| GI11109 [Drosophila mojavensis] |
4e-86 |
| InterPro |
IPR005225 |
Small GTP-binding protein domain |
|
| InterPro |
IPR001806 |
Small GTPase superfamily |
|
| InterPro |
IPR003579 |
Small GTPase superfamily, Rab type |
|
| InterPro |
IPR020849 |
Small GTPase superfamily, Ras type |
|
| InterPro |
IPR003578 |
Small GTPase superfamily, Rho type |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(BP) |
GO:0007264 |
small GTPase mediated signal transduction |
|
| Gene Ontology(BP) |
GO:0006184 |
GTP catabolic process |
|
| Gene Ontology(BP) |
GO:0015031 |
protein transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Gene Ontology(MF) |
GO:0003924 |
GTPase activity |
|
| Pfam |
PF00025.16 |
ADP-ribosylation factor family |
1.4e-07 |
| Pfam |
PF00009.22 |
Elongation factor Tu GTP binding domain |
0.0078 |
| Pfam |
PF00071.17 |
Ras family |
2.4e-49 |
| Pfam |
PF08477.8 |
Miro-like protein |
6.3e-18 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.07993 |