MidgeBase gene description page [Pn.02540]
Outline
| Gene ID | Pn.02540 |
| Type | Protein coding gene |
| Scaffold | PnScaf2185 |
| Start | 23679 |
| End | 24487 |
| Direction | + |
Sequence
Transcript: 573 (bp)
ATGCAGACCATCAAATGCGTTGTTGTCGGCGACGGAGCGGTCGGTAAAACGTGCTTGCTCATCTCGTATACCACCAACAAATTCCCATCCGAATACGTTCCGACAGTCTTCGACAACTACGCGGTGACCGTAATGATTGGCGGCGAGCCGTACACACTCGGACTGTTCGATACGGCTGGTCAGGAGGACTACGATCGTCTGCGACCGTTGTCATATCCACAGACCGACGTATTTCTCGTGTGTTTCTCCGTTGTCAGTCCCAGCTCCTTCGAGAATGTCAAGGAAAAGTGGGTTCCCGAAATCACCCATCACTGTCAGAAAACACCATTCTTGCTGGTCGGCACGCAGATCGATTTGCGCGATGAAAATGGTACGTTGGAGAAGTTGGCGAAGAACAAACAGAAGCCGATAACATTGGAGCAGGGCGAGAAGCTGGCAAAGGAATTGAAGGCTGTCAAATACGTAGAATGTTCCGCATTAACACAAAAAGGGCTGAAAAATGTTTTCGATGAAGCAATTCTAGCGGCGCTCGAACCACCAGAACCGGCAAAGAAAAAGCGATGCAAAATCTTG
Protein: 191 (aa)
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENGTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEPAKKKRCKIL
| Type | Start | End | Length |
| CDS |
23679 |
23856 |
178 |
| CDS |
23936 |
24045 |
110 |
| CDS |
24127 |
24324 |
198 |
| CDS |
24398 |
24484 |
87 |
| intron |
23857 |
23935 |
79 |
| intron |
24046 |
24126 |
81 |
| intron |
24325 |
24397 |
73 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACL83849 |
Cdc42-PA [synthetic construct] |
1e-105 |
| InterPro |
IPR005225 |
Small GTP-binding protein domain |
|
| InterPro |
IPR001806 |
Small GTPase superfamily |
|
| InterPro |
IPR003579 |
Small GTPase superfamily, Rab type |
|
| InterPro |
IPR020849 |
Small GTPase superfamily, Ras type |
|
| InterPro |
IPR003578 |
Small GTPase superfamily, Rho type |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(BP) |
GO:0007264 |
small GTPase mediated signal transduction |
|
| Gene Ontology(BP) |
GO:0006184 |
GTP catabolic process |
|
| Gene Ontology(BP) |
GO:0015031 |
protein transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Gene Ontology(MF) |
GO:0003924 |
GTPase activity |
|
| Pfam |
PF00025.16 |
ADP-ribosylation factor family |
1.3e-08 |
| Pfam |
PF00009.22 |
Elongation factor Tu GTP binding domain |
0.0008 |
| Pfam |
PF00071.17 |
Ras family |
2e-54 |
| Pfam |
PF08477.8 |
Miro-like protein |
2e-16 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS203397PA |
| T. castaneum |
TC013187 |
| A. gambiae |
AGAP002440 |
| H. melpomene |
HMEL016632-PA |
| P. humanus |
PHUM424410-PA |
| P. vanderplanki |
Pv.05631 |
| M. musculus |
ENSMUSG00000006699 |
| N. vitripennis |
NV17867-PA |
| D. melanogaster |
FBgn0010341 |
| B. mori |
BGIBMGA012295-TA |
| H. sapiens |
ENSP00000341072 |
| N. vitripennis |
NV18192-PA |
| A. aegypti |
AAEL008543 |
| H. sapiens |
ENSP00000383118 |
| S. invicta |
SI2.2.0_00547 |
| A. mellifera |
GB20112-PA |