MidgeBase gene description page [Pn.02517]
Outline
| Gene ID | Pn.02517 |
| Type | Protein coding gene |
| Scaffold | PnScaf2141 |
| Start | 32963 |
| End | 33858 |
| Direction | + |
Sequence
Transcript: 531 (bp)
ATGAAAGCAAAAGGAGTGCTTAAGGAATATGAGATCATCGGCCGAAAATTGCCGTCCGAAAAAGATCCCAATCCACCATTGTTCAAGATGATCATCTTCGCACCGGATCACATCGTTGCCAAGAGTCGTTTCTGGTATTTCTTGCGTCAATTGCGCAAATTCAAGAAAGCAACTGGTGAAATCGTCAGCGTCAAGCGCAAGTACGAGAAGACGCCACTCAAAATCAAGAATTTTGGCATTTGGTTGCGTTATGACTCGCGCTCGGGAACCCACAACATGTACCGTGAGTACCGCGACTTGACCATTGGTGGAGCAGTCACACAATGCTATTCCGACATGGCTTCGCGCCATCGTGCCCGCGCTCATTCAATCCAGATTATTAAGATTGAAAAGGTTGCGGCGATCAAGACTCGTCGTGCAAACATCAAGCAGTTCCACAATTCAAAGATCAGGTTCCCGTTGGTGCAGAGATATCACCACAAACGCTACAGACAATTGTTCTCAATTGCTCGCCCAACAACACACTTCAAC
Protein: 177 (aa)
MKAKGVLKEYEIIGRKLPSEKDPNPPLFKMIIFAPDHIVAKSRFWYFLRQLRKFKKATGEIVSVKRKYEKTPLKIKNFGIWLRYDSRSGTHNMYREYRDLTIGGAVTQCYSDMASRHRARAHSIQIIKIEKVAAIKTRRANIKQFHNSKIRFPLVQRYHHKRYRQLFSIARPTTHFN
| Type | Start | End | Length |
| CDS |
32963 |
32980 |
18 |
| CDS |
33271 |
33627 |
357 |
| CDS |
33700 |
33855 |
156 |
| intron |
32981 |
33270 |
290 |
| intron |
33628 |
33699 |
72 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
BAH28893 |
ribosomal protein L18a [Polypedilum vanderplanki] |
1e-98 |
| InterPro |
IPR023573 |
Ribosomal protein L18a/LX |
|
| InterPro |
IPR021138 |
Ribosomal protein L18a |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF01775.12 |
Ribosomal L18ae/LX protein domain |
6e-56 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000045128 |
| P. humanus |
PHUM338970-PA |
| C. quinquefasciatus |
CPIJ010528 |
| A. aegypti |
AAEL006785 |
| N. vitripennis |
NV12000-PA |
| B. mori |
BGIBMGA011467-TA |
| S. invicta |
SI2.2.0_15860 |
| A. gambiae |
AGAP012284 |
| T. castaneum |
TC004468 |
| H. sapiens |
ENSP00000403914 |
| P. vanderplanki |
Pv.03929 |
| D. melanogaster |
FBgn0010409 |
| H. sapiens |
ENSP00000222247 |
| D. plexippus |
DPOGS209150PA |
| H. melpomene |
HMEL010028-PA |
| N. vitripennis |
NV11939-PA |
| A. mellifera |
GB12795-PA |