MidgeBase gene description page [Pn.02478]
Outline
| Gene ID | Pn.02478 |
| Type | Protein coding gene |
| Scaffold | PnScaf2095 |
| Start | 14611 |
| End | 24010 |
| Direction | - |
Sequence
Transcript: 1101 (bp)
ATGCTCCTACGTGATTTCATTTTTGGCGAAATCATGTGCAAGCTGCTGCCGTATCTGCAAGCCACTTCGGTGAGCGTCTCGGCGTGGACGTTAGTTGCAATCAGCGTGGAAAGATATTGTGCAATTTGTCATCCGCTCCGCTCGAGACGATGGCAGACGCTCAATCATGCCTACAAATCGATTGTCCTCATTTGGATAGCGAGCTTACTCTTTATGCTTCCGATCGCTGCGCTCAGCAAGCTCATACCGACCAGTCAGGGTCACAAGAAGTGTCGCGAGGTGTGGCCCACAGAGCCGTTCCATTACGAGAGGATATTTAATTTGTTTCTAGACATGCTGTTGCTCGTCCTTCCCCTCGTCATTCTCGCTGCCGCCTACACGATGATCTCGCAAACCCTCTGGCGAAGCATGGACGCTGAGAAGGAAATTGTGAGGCAAGCATCAGTTTACTCAAACGCGTCAACGTCACGCAAACGAACGAAGGTAAACGACGGCATCTCATTTCAGAAGCTCCGCAACTCATCGCAAGAAATTATGTTGCTGAATCGAGATTCCAAGAAGCAAACATTCGGCCTGAGGCGGTCTAATCCGGCGAAGAGTTTGCTCAACAAACGCCGCGTCATAAAGATGCTGTTTGTCGTCGTAATCGAGTTCTTCATATGCTGGACGCCGCTCTACGTCATAAACACGATCGCCCTTTTCAACCCGAAGGCCGTCTATCAGCATTTGGGCTACACGGCCATCAGCTTTCTCCAGTTACTCGCCTACTCTTCGTCGTGCTGCAATCCCATCACGTACTGTTTCATGTCGCTCGGCTTTCGGAAAGCTTTCATGAATCTCTTTCGGTGCTTTCGGCACGAGCCGGGCCGGCGGATCAGCGTCAGCGGATACTGCATCAACACGTCGGCGGGCAGTGCCGAGGCGTGCCAAATTCTCGCCGCCACCGTCAATTCAATCATGCAGAACGAGAGCAGCAGCAATAACCTGCCTGACCAGGAAAATGAGCTTGATCTGGATCTCAAGAACAGCTTCAATTTTCAGGAGCTCAACTTCAACGACTATCTGAGTCAGGACGATAAAGTTTCTACGGATTTTATAGAT
Protein: 367 (aa)
MLLRDFIFGEIMCKLLPYLQATSVSVSAWTLVAISVERYCAICHPLRSRRWQTLNHAYKSIVLIWIASLLFMLPIAALSKLIPTSQGHKKCREVWPTEPFHYERIFNLFLDMLLLVLPLVILAAAYTMISQTLWRSMDAEKEIVRQASVYSNASTSRKRTKVNDGISFQKLRNSSQEIMLLNRDSKKQTFGLRRSNPAKSLLNKRRVIKMLFVVVIEFFICWTPLYVINTIALFNPKAVYQHLGYTAISFLQLLAYSSSCCNPITYCFMSLGFRKAFMNLFRCFRHEPGRRISVSGYCINTSAGSAEACQILAATVNSIMQNESSSNNLPDQENELDLDLKNSFNFQELNFNDYLSQDDKVSTDFID
| Type | Start | End | Length |
| CDS |
14614 |
15133 |
520 |
| CDS |
16512 |
16647 |
136 |
| CDS |
16881 |
17066 |
186 |
| CDS |
17163 |
17360 |
198 |
| CDS |
23950 |
24010 |
61 |
| intron |
15134 |
16511 |
1378 |
| intron |
16648 |
16880 |
233 |
| intron |
17067 |
17162 |
96 |
| intron |
17361 |
23949 |
6589 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_972750 |
PREDICTED: similar to CCK-like receptor at 17D3 CG32540-PB [Tribolium castaneum] gb|EFA02911.1| hypothetical protein TcasGA2_TC008438 [Tribolium castaneum] |
6e-87 |
| InterPro |
IPR009126 |
Cholecystokinin receptor |
|
| InterPro |
IPR017452 |
GPCR, rhodopsin-like superfamily |
|
| InterPro |
IPR000276 |
GPCR, rhodopsin-like, 7TM |
|
| Gene Ontology(BP) |
GO:0007186 |
G-protein coupled receptor signaling pathway |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF10320.4 |
Serpentine type 7TM GPCR chemoreceptor Srsx |
3.7e-05 |
| Pfam |
PF03600.11 |
Citrate transporter |
0.028 |
| Pfam |
PF06195.8 |
Protein of unknown function (DUF996) |
0.08 |
| Pfam |
PF10328.4 |
Serpentine type 7TM GPCR chemoreceptor Srx |
0.0027 |
| Pfam |
PF10323.4 |
Serpentine type 7TM GPCR chemoreceptor Srv |
0.0097 |
| Pfam |
PF10324.4 |
Serpentine type 7TM GPCR chemoreceptor Srw |
2.1e-06 |
| Pfam |
PF06271.7 |
RDD family |
0.041 |
| Pfam |
PF00001.16 |
7 transmembrane receptor (rhodopsin family) |
4.8e-44 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.02480 |
| Pn.12853 |
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000437001 |
| D. melanogaster |
FBgn0030954 |
| D. plexippus |
DPOGS202645PA |
| A. aegypti |
AAEL017238 |
| T. castaneum |
TC007536 |
| C. quinquefasciatus |
CPIJ016281 |
| B. mori |
BGIBMGA010612-TA |
| D. melanogaster |
FBgn0259231 |
| P. vanderplanki |
Pv.03199 |
| H. sapiens |
ENSP00000295589 |
| T. castaneum |
TC008438 |
| C. quinquefasciatus |
CPIJ005574 |
| B. mori |
BGIBMGA001300-TA |
| C. quinquefasciatus |
CPIJ016282 |
| P. humanus |
PHUM507060-PA |
| H. melpomene |
HMEL005613-PA |
| A. gambiae |
AGAP001022 |
| A. mellifera |
GB18786-PA |
| M. musculus |
ENSMUSG00000029193 |
| A. aegypti |
AAEL010207 |
| A. aegypti |
AAEL017152 |
| P. vanderplanki |
Pv.03200 |
| S. invicta |
SI2.2.0_03447 |
| P. humanus |
PHUM615310-PA |