MidgeBase gene description page [Pn.02473]
Outline
| Gene ID | Pn.02473 |
| Type | Protein coding gene |
| Scaffold | PnScaf2091 |
| Start | 1825 |
| End | 2627 |
| Direction | + |
Sequence
Transcript: 621 (bp)
ATGGCAGCCTACAAAGTAAATTACTTCACTTTCAAGGGATTGGCAGAGCCCATAAGGTTCATTCTGGCCTTCGCCGACGTGGATTTCACCGACAATCGCGTCGAGTGGGAAGACTGGCCCGCACTTAAGCCGACCATGCCACTCGCCCAAATGCCGGTTCTCGAGGCGGAGGGCAGAATGTTCCACCAATCGATTCCAATATGCCGCTATCTCGGCAACAAGTTCAACATTGTGGGCGACAGTGCTCTCGAGAATTACGAAATCGATTGCGTTGCCGAGACGGCAAATGAGCTGCGACGAAAGGTCGCTGTTTGGTTTTATGACCACAAGAAGGAGAAGAATGAATACTACGATACCCTCACCAAGGAGATTCTGCCGTTCTACCTGCAAAAGTTTGATGCCCAGGTAGCCAAAAACAACGGTTTTCTGGCGCTCGACGGCAAGATCACTTGGGGTGACGTCTACTCGATTGCGGTCTTTGAGTACACCAGCAGTCTCATTGGGTTTGACATTCTCGAGGGTTATGACAACCTTAAGAAGGTCTATGACAGGATTATTGAAGCTAAAGGTCTCCAAAAGTACCTCAAGACAAGACCAGACGATAGATTTCCTCAGTTTAAC
Protein: 207 (aa)
MAAYKVNYFTFKGLAEPIRFILAFADVDFTDNRVEWEDWPALKPTMPLAQMPVLEAEGRMFHQSIPICRYLGNKFNIVGDSALENYEIDCVAETANELRRKVAVWFYDHKKEKNEYYDTLTKEILPFYLQKFDAQVAKNNGFLALDGKITWGDVYSIAVFEYTSSLIGFDILEGYDNLKKVYDRIIEAKGLQKYLKTRPDDRFPQFN
| Type | Start | End | Length |
| CDS |
1825 |
1957 |
133 |
| CDS |
2023 |
2190 |
168 |
| CDS |
2305 |
2624 |
320 |
| intron |
1958 |
2022 |
65 |
| intron |
2191 |
2304 |
114 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACP27597 |
glutathione S-transferase [Chironomus tentans] |
9e-74 |
| InterPro |
IPR004046 |
Glutathione S-transferase, C-terminal |
|
| InterPro |
IPR010987 |
Glutathione S-transferase, C-terminal-like |
|
| InterPro |
IPR017933 |
Glutathione S-transferase/chloride channel, C-terminal |
|
| InterPro |
IPR012336 |
Thioredoxin-like fold |
|
| InterPro |
IPR004045 |
Glutathione S-transferase, N-terminal |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13409.1 |
Glutathione S-transferase, N-terminal domain |
0.014 |
| Pfam |
PF13410.1 |
Glutathione S-transferase, C-terminal domain |
0.11 |
| Pfam |
PF02798.15 |
Glutathione S-transferase, N-terminal domain |
6.5e-12 |
| Pfam |
PF13417.1 |
Glutathione S-transferase, N-terminal domain |
5.4e-06 |
| Pfam |
PF02872.13 |
5'-nucleotidase, C-terminal domain |
0.072 |
| Pfam |
PF00043.20 |
Glutathione S-transferase, C-terminal domain |
2.1e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06995 |