MidgeBase gene description page [Pn.02454]
Outline
| Gene ID | Pn.02454 |
| Type | Protein coding gene |
| Scaffold | PnScaf2057 |
| Start | 21235 |
| End | 23534 |
| Direction | - |
Sequence
Transcript: 2019 (bp)
ATGCCGGCGATATCAAAGGAGGTGAACAAAGACCTAAAAGATGAGCGCGACAAAGTCAAATTTAACGTTGATGAGTTTTCAAACTGGTTCTATGGCGGCGCAGAGAAAGTAGCGGAAAAGAGAAAGATCGAAAATTACTTCTTATCTGATAAGAGTTTTAATTTGGAGCTTGATACGAGCTATCTCAGCTACAAGGACAAGTATGAAGAGGCTGTCCGCCGGAGCTGCATTGTTTTTAACAAAGTCAGGCAGCTTCACGGCGAACTCGGCGGCACCGAGGAAGATTTCATTAAAATCATGAATAATTTGCGGACGACAATGTCAGCGATTAACAAAGAGGGCAACCCGCTCATGCTCCACTTCGGCATGTTCACCGTGACGATCCTCAACTTAGCCAACGAGGAACAGCTGGCCGAATGGCTGCCAAAGTGCCTCAACATGAGCATTCTCGGCACTTACGCGCAAACCGAGCTCGGCCACGGCACCTACATCAAGCGTCTCGAAACCACCGCCACCTACGATGCAAATACCAAAGAGTTTGTCATCCACTCGCCCTCGCTCACCGCCTACAAGTGGTGGCCCGGAAATCTCGGCCACACGACCAACTACGCGATTGTGATGGCGCAGCTCTACTCGCAGGGCGAGAACCACGGCATTCAGCCGTTCATTGTGCAGCTGAGAGACCATGAGACGCACAAGCCGCTGCCGGGCATCACGATTGGTGATATCGGCAACAAGGTCGGCTTCCAGACAGTCAACAACGGCTATCTCGGCTTCGACCACGTCCGCGTGCCGTACAAGAACCTGCTGATGAAGAACTCGAAGTTCCTCGAGGACGGAACGTTCGTGAAGTCGAAGAATGTGAAGCAGAACTACGGCACGATGGTCTTTGTGCGCGTCTCGATGATCATGGACACCGTCAACGTCATCACAAGGGCCGTGACGGTGGCGACGCGCTACTCGCTCGTGCGCCGCCAGAGCCCGATAAATCCCGAGGATCGCGAGCCGAAAATCATCGACCACGTCACGCAGCAGTACAAGATCTTTCCGGGCATCGCGAAAGCCATTGTCTTCAAGTGCATGGCTGACTACTTGAGCGGCCTGCACCGGCAAATCACGCAGGAGGGAAAGGCGGGCAATCTAGCGCGCGCTCCCGAGCTTCATGCGCTGTCGTGTTGTCTGAAAGCCGTTTGCACGAATGAGGCCGCGAAAATTACCGAGGTTTGTCGTTTGGCGTGCGGCGGCCACGGGTTCTTGAAGGCCTCGGGACTTGTCGACAACTACAATAACGCCACCGCCGCTCAGACCTACGAGGGCGAAAATACTGTGATGCTGCTGCAGACTGCGCGATTCCTGATCAAGTCCTACGATCAGGCGCGGAACGGCGAGAAGTTGACTGAGGGCGTGGCGTACTTGAGCGACTATGTCAAGCGAAACGGCAAGCGCGAGGTGTTTGACGACTCGATTCGAGGAATTCTGAGGGCTGTGCAATCGGCTGCTGCCGGTAAGGTCGCTTCGGCTTGGCGACACATCGAGGAGAAGAAAAAGTACTTTTCGGCTGAGGAGGCGACCAATCAGACGGGCGTCGAGCTGACGAGAGCCTCCGAGTTGCACTGTCACGTGTGCTTGCTGCAAATCGGAATCGAGGAGATCGAGGGCGCAATAAGGAGCGTCTCGCCCGCACTGGGCGAAGTTTTCAGGAATGTTCTGGAGCTTTACAGCGTTGATCTCGTCCTCAGCATGACCGGAGACATCTTGCAGTACGTTGACATGACAATCGAAGACATCGATAGACTACAGAAGCGCTTGGAGGCTTCGCTAAGGTTCTTCAGAACGTCTGCGATTGGCATCGTCGATGGCTTCGATCTCTCGGACGAGGTGCTCGGGTCGACAATCGGTGCGTACGACGGCAATGTGTATGAGCGTCTGTTTGCCGCCGCACAGAAGTCGCCGCTCAACCAGGAGGACGTCAACAAGTCTTTCCACCTGTACCTTAAGCCATTCATGAAATCCAACTTG
Protein: 673 (aa)
MPAISKEVNKDLKDERDKVKFNVDEFSNWFYGGAEKVAEKRKIENYFLSDKSFNLELDTSYLSYKDKYEEAVRRSCIVFNKVRQLHGELGGTEEDFIKIMNNLRTTMSAINKEGNPLMLHFGMFTVTILNLANEEQLAEWLPKCLNMSILGTYAQTELGHGTYIKRLETTATYDANTKEFVIHSPSLTAYKWWPGNLGHTTNYAIVMAQLYSQGENHGIQPFIVQLRDHETHKPLPGITIGDIGNKVGFQTVNNGYLGFDHVRVPYKNLLMKNSKFLEDGTFVKSKNVKQNYGTMVFVRVSMIMDTVNVITRAVTVATRYSLVRRQSPINPEDREPKIIDHVTQQYKIFPGIAKAIVFKCMADYLSGLHRQITQEGKAGNLARAPELHALSCCLKAVCTNEAAKITEVCRLACGGHGFLKASGLVDNYNNATAAQTYEGENTVMLLQTARFLIKSYDQARNGEKLTEGVAYLSDYVKRNGKREVFDDSIRGILRAVQSAAAGKVASAWRHIEEKKKYFSAEEATNQTGVELTRASELHCHVCLLQIGIEEIEGAIRSVSPALGEVFRNVLELYSVDLVLSMTGDILQYVDMTIEDIDRLQKRLEASLRFFRTSAIGIVDGFDLSDEVLGSTIGAYDGNVYERLFAAAQKSPLNQEDVNKSFHLYLKPFMKSNL
| Type | Start | End | Length |
| CDS |
21238 |
21495 |
258 |
| CDS |
21554 |
22962 |
1409 |
| CDS |
23025 |
23086 |
62 |
| CDS |
23165 |
23324 |
160 |
| CDS |
23405 |
23534 |
130 |
| intron |
21496 |
21553 |
58 |
| intron |
22963 |
23024 |
62 |
| intron |
23087 |
23164 |
78 |
| intron |
23325 |
23404 |
80 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001847631 |
acyl-CoA oxidase [Culex quinquefasciatus] gb|EDS26532.1| acyl-CoA oxidase [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR006090 |
Acyl-CoA oxidase/dehydrogenase, type 1 |
|
| InterPro |
IPR012258 |
Acyl-CoA oxidase |
|
| InterPro |
IPR013786 |
Acyl-CoA dehydrogenase/oxidase, N-terminal |
|
| InterPro |
IPR009100 |
Acyl-CoA dehydrogenase/oxidase |
|
| InterPro |
IPR006091 |
Acyl-CoA oxidase/dehydrogenase, central domain |
|
| InterPro |
IPR002655 |
Acyl-CoA oxidase, C-terminal |
|
| InterPro |
IPR009075 |
Acyl-CoA dehydrogenase/oxidase C-terminal |
|
| Gene Ontology(BP) |
GO:0006635 |
fatty acid beta-oxidation |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(BP) |
GO:0006631 |
fatty acid metabolic process |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(CC) |
GO:0005777 |
peroxisome |
|
| Gene Ontology(MF) |
GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
|
| Gene Ontology(MF) |
GO:0003997 |
acyl-CoA oxidase activity |
|
| Gene Ontology(MF) |
GO:0050660 |
flavin adenine dinucleotide binding |
|
| Gene Ontology(MF) |
GO:0003995 |
acyl-CoA dehydrogenase activity |
|
| Pfam |
PF00441.19 |
Acyl-CoA dehydrogenase, C-terminal domain |
3.4e-05 |
| Pfam |
PF04031.8 |
Las1-like |
0.072 |
| Pfam |
PF13715.1 |
Cna protein B-type domain |
0.032 |
| Pfam |
PF01756.14 |
Acyl-CoA oxidase |
2.5e-46 |
| Pfam |
PF02770.14 |
Acyl-CoA dehydrogenase, middle domain |
8.1e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.02453 |
| Pn.05063 |
| Pn.02455 |
| Pn.02451 |
| Pn.02452 |
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS201422PA |
| C. quinquefasciatus |
CPIJ006187 |
| P. vanderplanki |
Pv.05051 |
| H. melpomene |
HMEL009067-PA |
| N. vitripennis |
NV18937-PA |
| C. quinquefasciatus |
CPIJ003061 |
| A. aegypti |
AAEL000735 |
| B. mori |
BGIBMGA002573-TA |
| B. mori |
BGIBMGA002576-TA |
| B. mori |
BGIBMGA002575-TA |
| D. melanogaster |
FBgn0034629 |
| P. vanderplanki |
Pv.07106 |
| T. castaneum |
TC014245 |
| B. mori |
BGIBMGA002574-TA |
| S. invicta |
SI2.2.0_01615 |
| D. plexippus |
DPOGS201419PA |
| H. sapiens |
ENSP00000418562 |
| H. melpomene |
HMEL009073-PA |
| D. plexippus |
DPOGS201540PA |
| D. melanogaster |
FBgn0029924 |
| M. musculus |
ENSMUSG00000020777 |
| H. sapiens |
ENSP00000293217 |
| D. melanogaster |
FBgn0034628 |
| H. sapiens |
ENSP00000307697 |
| P. vanderplanki |
Pv.05052 |
| D. melanogaster |
FBgn0027572 |
| H. sapiens |
ENSP00000301608 |
| H. melpomene |
HMEL009070-PA |
| A. aegypti |
AAEL008574 |
| D. plexippus |
DPOGS201421PA |
| H. sapiens |
ENSP00000438771 |
| B. mori |
BGIBMGA002716-TA |
| A. gambiae |
AGAP011798 |
| H. sapiens |
ENSP00000446392 |
| P. vanderplanki |
Pv.14785 |
| D. plexippus |
DPOGS201423PA |
| P. vanderplanki |
Pv.07107 |
| P. humanus |
PHUM617660-PA |
| C. quinquefasciatus |
CPIJ003059 |
| P. vanderplanki |
Pv.14000 |
| A. mellifera |
GB17460-PA |
| H. sapiens |
ENSP00000441257 |
| H. melpomene |
HMEL009071-PA |