MidgeBase gene description page [Pn.02440]
Outline
| Gene ID | Pn.02440 |
| Type | Protein coding gene |
| Scaffold | PnScaf2052 |
| Start | 8377 |
| End | 10553 |
| Direction | - |
Sequence
Transcript: 1860 (bp)
ATGAGAATATTCTTCGGCTATTTTGTGGTATTTCTTTCAATTTTCCCGGAGGACTCTTGCGGGAACGAGGGAGTGATTGAGCTCGTGGACGAAATAGTCAACAAAAATGAGTACGAAGAGAGAATTACGAGTGTGAACTTCATCACAGCGTCCTGGGCTATGGATCTGCACGAGAGTGAGTTGTTTACTGCGCTAATTGCGCGAATTTCGAAGGAAAAGGCCGTGACTCGACTGACGGAGAAGAGCGTGAGCAAGCTGAGAAACAGCCGGATGCTCTTCAACATCATCTTCGTCAGCTCAATGAAGGGCTTCAATGTTCTGCTCAAGCACTTCACCGACGAGATTTTCAACTTTGGCGGCTATTTCGTGATAATTTTCGGCAACGCCAGTCTCCACGATGCGCGCGAAATTTTCCAAATGCTGTGGGACTTTTACATCTACAACGTGAACTTGATTCGACTCGAGAAAAACGAGACGACGCTCGTCGAGACTTTCTTTCCCTTCCTGCCGGCGAGCTGCAACCGAACAAACCCTGTCGAGGTCGCTCGTCACAAGAGCGGGAAACTCGTCCACCGACCGGTGGATTTCTTTCCGAAAAAGTTCACCAATTTCCACAACTGTCACCTGAAAGTCGCGACATTCAAGACCCTGGCGCCATCGGTATTGACGACCGACCATCCCAACGGCACAATGGAGCTCTACGGCCGCGACATTGAGATCATCAAGACGCTGGAGAAGGAGCTGAACTTCCGGGCGAACGTCACGTATCTCACAAAATACGGCTCGTGGGGCGTCCTCTACCCCAACGGCACAACTACCGGCGCCATGGGCATGGCTCAGAGGCGAGAAACCGACTTCGCCATCGGCAACCTGAACTTGAAATACGACCGGGCTCTCATCATGGACTACAGCATCGGCTACTACTTGGAGTCGCTGATATTCGTCGTCCCTCAAGGCCAGCCGTACTCCTCCTTCCGAAAGCTCCAACGGCCATTCGACACAACGGTGTGGCTCTCGCTTTTAATCACCATCATCGTCACGGTGGCGGTCATCATCGTTCTGTACTTTCAAAAAAAGCGAGTCCGACACTTCATTTACGGCAGGAGTGTCAAATACCCGCTCCTCAACGTGATCATGGCGATTTTCGGTGTCAGCTATCACAAGCTGCCGTCGCGAAATTTCGCGCGCTTTCTGCTCATGACGTTCCTCATGTTTTGCCTCGTCATTCGGTCGCTCTATCAGGGCTCGTTGTATCAGTTCATGCAGATAACCGACAGCCAACCGCCGGTGGCATCGATAGAGGAGATGGCGGAGAGGGATTTCACGTTCTATCTGATTGCATCGTACGACGACATGACACGCAGCAATGCGGTCATCATGAAGCGGAGAAAAATCATTCCGCCATCGGATCTGTATGTAATTATGAATGCCACGCTCGATGACGATTTCAGGGGATCGAATTTATTGGCAATTTCTGAGATTCTCTACAGCAATCAAGTGCGAGCGAGAAGCAAGGAAGCGCTGTACACTGTTTGCAAGCAACTCTTCACGATGATTCCCGTGAGCATTTACTACCCCAAGGACAGCTACCTTGTTGCGCCATTTGATGACAAGTTGATTTGGTTCCAAGACGCCGGGCTGATACTGCATTGGATATCGAAGGAAGTGGACTATAAATATCTGTCTTACAAGCCGGAAACCACGTCACCGCAGGTGATGAACGTCGAGCATCTTTCGGGCACGTTTCAAATCTGGATGATATTGTGCATTTGTTCGATTGTGGTTTTCGTTGGCGAGATATTTTGGAATGCCGGTCACACGAAAATCAGGGAGAGTAGCGTGATAAGGCTGAAGAGAGTT
Protein: 620 (aa)
MRIFFGYFVVFLSIFPEDSCGNEGVIELVDEIVNKNEYEERITSVNFITASWAMDLHESELFTALIARISKEKAVTRLTEKSVSKLRNSRMLFNIIFVSSMKGFNVLLKHFTDEIFNFGGYFVIIFGNASLHDAREIFQMLWDFYIYNVNLIRLEKNETTLVETFFPFLPASCNRTNPVEVARHKSGKLVHRPVDFFPKKFTNFHNCHLKVATFKTLAPSVLTTDHPNGTMELYGRDIEIIKTLEKELNFRANVTYLTKYGSWGVLYPNGTTTGAMGMAQRRETDFAIGNLNLKYDRALIMDYSIGYYLESLIFVVPQGQPYSSFRKLQRPFDTTVWLSLLITIIVTVAVIIVLYFQKKRVRHFIYGRSVKYPLLNVIMAIFGVSYHKLPSRNFARFLLMTFLMFCLVIRSLYQGSLYQFMQITDSQPPVASIEEMAERDFTFYLIASYDDMTRSNAVIMKRRKIIPPSDLYVIMNATLDDDFRGSNLLAISEILYSNQVRARSKEALYTVCKQLFTMIPVSIYYPKDSYLVAPFDDKLIWFQDAGLILHWISKEVDYKYLSYKPETTSPQVMNVEHLSGTFQIWMILCICSIVVFVGEIFWNAGHTKIRESSVIRLKRV
| Type | Start | End | Length |
| CDS |
8380 |
8700 |
321 |
| CDS |
9015 |
10553 |
1539 |
| intron |
8701 |
9014 |
314 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001650795 |
hypothetical protein AaeL_AAEL015149 [Aedes aegypti] gb|EAT32643.1| conserved hypothetical protein [Aedes aegypti] |
4e-66 |
| InterPro |
IPR001638 |
Extracellular solute-binding protein, family 3 |
|
| InterPro |
IPR001320 |
Ionotropic glutamate receptor |
|
| InterPro |
IPR019594 |
Glutamate receptor, L-glutamate/glycine-binding |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0030288 |
outer membrane-bounded periplasmic space |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Gene Ontology(MF) |
GO:0005215 |
transporter activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
4e-13 |
| Pfam |
PF00497.15 |
Bacterial extracellular solute-binding proteins, family 3 |
7.7e-06 |
| Pfam |
PF11337.3 |
Protein of unknown function (DUF3139) |
0.54 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.02438 |
| Pn.13165 |
| Pn.02439 |
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP013520 |
| A. aegypti |
AAEL014688 |
| P. vanderplanki |
Pv.10769 |
| P. vanderplanki |
Pv.10770 |
| A. aegypti |
AAEL015149 |
| P. vanderplanki |
Pv.10771 |
| P. vanderplanki |
Pv.10772 |