MidgeBase gene description page [Pn.02439]
Outline
| Gene ID | Pn.02439 |
| Type | Protein coding gene |
| Scaffold | PnScaf2052 |
| Start | 5704 |
| End | 8061 |
| Direction | - |
Sequence
Transcript: 1782 (bp)
ATGAACTTGATAGGGGAAATCAAGGTGTTGGAGGCAATCATTGAAAGCAATAATGTCACAAGTGTCAATATCATAATCTCATCGAGCAATGAGAATTTTGTTTCTGAACTAATTTTGAGGATTTCCGAAGACAAATCAGTGATTATTATTAAAGATTTGAACTTGTGCAAGCCTCCCAACGTGAAATTCCTCTTCAACGTGATTTTGGTGGACACAAAAAACGAATTTTTGGAAATTGTCAATAATTTTACGGACAAGAAATTCAACTACGGAGGGTACTACGTAGTGATGTTCAACAATGCAAGTGTTGTAGATACCCAAGAGATATTCGCGTCCCTTTGGAGACTTTACATCCACAACGTGAACCTGATAAGACAAGAGGATAGCGATACCATAATTGTAGACACTTTCCACCCTTTCCAACCGTCAAAGTGCAACCAAACGCATCCAATGGAAATCGCTAGATTTAGGAACGGGAAATTTATTCAGTCGACTGAGTTCTTTCCCAAAAAGTTCAAAAATTTGCACAACTGCCCACTCAAGGTTCCCATATTCCAAAGCTCAACGCCTGCAGTTCTGCAAAAAATTCACCCAAACGGATCTATAGACTACTTTGGTCGCGACGTCACGATTTCCGAGACCATAAGCGAAAAGCTCAACTTCACCAGATCGCTCATTTACCTGCACCATTATGGCTCGTGGGGAGCTACCCTCGCCAACGGTTCAGTCACTGGCGCCATCGGCTACGTCTTTCGGCGAGAAGCGGAGTTCACCATCGGAAATCTGCTGCTCAAGAACGAGCGAGCCGTCATCCTCGACTACAGCTACAGCTACTTCCTCAACTCGATTGTGTGGATCATTCCCAAGGGCAAGCCTTACTCCTCCTTCCGCAAGCTCATTCGACCCTTCGAGAACAGCGTGTGGCTCTGCTTGTTTGCCGTCATTGTAGTCGGCACGCTCGTCATCGTCCTCGTCACGTTTCAGTCGACTCGAGTCAAGTCGTTTGTCTACGGCGAGCACAACACGACGCCCTTCCTCAACATGCTGCTCGCGATCTTTGGCATCTCGATGAGCCGGCTGCCGAAGCGGAATTTCGCGAGATTCCTGCTCATGGTGTTCCTGCTCTTCTGCCTGGTTCTGCGGTCGCTCTACCAGGGATCGCTCTTCCAGTTTCTTCAGTCGAACGACAACGAGTCGGAGGTTGGTTCGGTTGAGGAGATGGCGCGCAGGGACTTCACATTCTACATGCATTCATCCTATGAGGAATACACTCGCGAGGATCCGCTGGTCAAAACGCGCCGCAAAATGATATCGCCCAGCGAAATGTACACTATCATGAACAATACAAACGATAGGAGCTACAAGGGAACCATCATCGTGTCCATTTTGGATGCACTCTACAAGAACAAGCTGAGAGCGTGGAGCAATGAGGAGCTGTTTGCCATCTGCAAGGAATTCTACATGATGACACCAATAACGGTCTACTTTCCGAAGAACAGCTATCTGGTCGACGAGTTCGACGAGCTCCTGCATCGCTTCCAAAGTGCCGGTCTCATCGACTTTTGGACCTCGAACGAAGTCAGCTACGAGTTTTTGAATTTCAAAGAAGACACAGGCGGGCCAAAACCGATGAATGTCACTCACTTTTCGGGGACTTTTCAGATTTGGTTGTTTTCATGCTGCATGGCGTTCGTGGTGTTTCTCTTTGAGCTGCTGTGGAGTGCGTACGAGAGGACTCGCAGAGGTCGGCAGTCGGCAGACGAGTCGCTTGTGTGGAACAAC
Protein: 594 (aa)
MNLIGEIKVLEAIIESNNVTSVNIIISSSNENFVSELILRISEDKSVIIIKDLNLCKPPNVKFLFNVILVDTKNEFLEIVNNFTDKKFNYGGYYVVMFNNASVVDTQEIFASLWRLYIHNVNLIRQEDSDTIIVDTFHPFQPSKCNQTHPMEIARFRNGKFIQSTEFFPKKFKNLHNCPLKVPIFQSSTPAVLQKIHPNGSIDYFGRDVTISETISEKLNFTRSLIYLHHYGSWGATLANGSVTGAIGYVFRREAEFTIGNLLLKNERAVILDYSYSYFLNSIVWIIPKGKPYSSFRKLIRPFENSVWLCLFAVIVVGTLVIVLVTFQSTRVKSFVYGEHNTTPFLNMLLAIFGISMSRLPKRNFARFLLMVFLLFCLVLRSLYQGSLFQFLQSNDNESEVGSVEEMARRDFTFYMHSSYEEYTREDPLVKTRRKMISPSEMYTIMNNTNDRSYKGTIIVSILDALYKNKLRAWSNEELFAICKEFYMMTPITVYFPKNSYLVDEFDELLHRFQSAGLIDFWTSNEVSYEFLNFKEDTGGPKPMNVTHFSGTFQIWLFSCCMAFVVFLFELLWSAYERTRRGRQSADESLVWNN
| Type | Start | End | Length |
| CDS |
5707 |
6036 |
330 |
| CDS |
6278 |
7714 |
1437 |
| CDS |
8047 |
8061 |
15 |
| intron |
6037 |
6277 |
241 |
| intron |
7715 |
8046 |
332 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001650794 |
hypothetical protein AaeL_AAEL015150 [Aedes aegypti] gb|EAT32642.1| conserved hypothetical protein [Aedes aegypti] |
2e-62 |
| InterPro |
IPR001320 |
Ionotropic glutamate receptor |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
1e-16 |
| Pfam |
PF07298.6 |
NnrU protein |
0.019 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.02438 |
| Pn.13165 |
| Pn.02440 |
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP013520 |
| A. aegypti |
AAEL014688 |
| P. vanderplanki |
Pv.10769 |
| P. vanderplanki |
Pv.10770 |
| A. aegypti |
AAEL015149 |
| P. vanderplanki |
Pv.10771 |
| P. vanderplanki |
Pv.10772 |