MidgeBase gene description page [Pn.02438]
Outline
| Gene ID | Pn.02438 |
| Type | Protein coding gene |
| Scaffold | PnScaf2052 |
| Start | 151 |
| End | 5345 |
| Direction | - |
Sequence
Transcript: 3744 (bp)
ATGCCGTGGCTCAAGGCTGTTCTGCTCCTTGTTCTGAGTTTCTGCTCTGTGTCGGCATACGACGAGGATGTTGCCGAAGTCACTCTTGATGTCATCAACTCGGCTTTTGGCCGTCAAAAGCTGACATCCGTGACGTTCATAGATGCGCATGTTGGAGAAGAATTGAGGTCCGTTGACGACTTTGTCGGTGAATTGCTCGCAAAAATCGGCAGCAGTCACATCATTCAGATCATCAACCTGGATACTATTGTGAGGACGAGATTTCGAAGGCGACTGAGTTCGAATGTCGTGATTGCCAATAAGATGCGGGATTTTAGAAACTTTGCAAGCACTTTGACCCATCACACCTACGACTTTGGTGGCTTCTACGTAATTGTGTTTAAAAATGCGACTTTAGAGGAAACTCACAAGATTTTCCAGACACTTTGGGACTTTTACATCTACAACTTGTGTCTGATAAGAGAAGTGGGCGACCAGGTTCTTGTCGAGACTTTTTTCCCGTTTCAACCCAGCAAATGCAACACAACGGAGCCGGTCATTGTGGCCAAGCATCAAAACGGAGAATTTGTGTTCAAACCAACGGAATATTTTCCAAAAAAGTTCCAAAACTTCCACCAGTGTCCGCTTAAGTTCTCCACCTACGTGAGCCTCGGACCGTCCGTCATTCGACGAAATTTCCCCAACGGAAGCTTCGAGCTGGTCGGCCGCGATGTGGACGTTCGCAAGGCGCTCTCAGAGTCTTTCAACTTCAAACCCGAAAGATTCTTCATCGAAGGCTACGGAGGCTGGGGTTACTACAATGCCAACGGCACATCAACCCATGGGATGGGTCGAGCAATAAGACGGCAGTCCGACTTCATTCTGGGTGGAAACAACTTGAAGTACGATAGGTCGCTGGCCATGAGTCACTCCTACGGCTACTTCATCGATACCTTGATTGTCATGTTGCCGCCTAGCCAAGAAGTGAGCTCGATATACAAGCTGATCCGACCACTCGACAACTACGTGTGGATATGTGTTCTCTTCTCGATTACAATGGCCATGGTCGTGATAGTTGTGATTCAGTTCCAGTCAAGAGAAATCCGGAATTTTGTGTATGGAACCAACGTGAGGAATCCGTGCATGAATCTGTTGACAGCAATTGTTGGCGGATGCCAGGAAAAGCTGCCGCGAAGAAACTTTTCGAGATCAATGCTGATGATGTTCCTGCTCTTTTGCATCGTCATTCGTTCAGTCTATCAAGGATCTCTCTACAATCACCTGCAGAAAAACGACATGGAACAGGATCCACAAACACTTGAGGAAATCGCCGAGCGAAACATGACCTTCTACATTCTCATCTCGTGGGACGAAATGACTGTCGACAATCCCATCTTCAAGGGTCGCAGAGTGTTGGTCGATCCTGATCCTCATCGCGACATGTTGAACGATACGCTCAAAGAAAACTTCAATGGTGTCCTCATGACAGTAATCTCCGAAGTTTTGTACGCCAACAAGCTGAGGTCACTGCAGGGATTGCCTCTATTCAAAGTCTGCAAGGATCACTTCACGATGATACCAGTGGTCATGTATTTCCCCAAAAACAGTTACCTCGTGGAGCCATTCAACATGCGGCTCTTGTGGCTGGAATCCTCCGGACTAATCAGATGGTGGCAGTCGAACTACGCTGAAATGAAGTATTTGGCATCAGCTGACATTTTTAGTGGTCCAAGAAGTCTGCGCTTAACGCCACTGCAACTGACACTCACGACGATCAATTCACATGAATATTTGCTGATGATGTGTGCCTTAGTTGAGGAAGCGCCGAATACTCCGCTGTTTGTCGACAATATTTATACTCTGCCGGCGCATTCCGAGAATTTCAGTCGTGGCTTGTTAGCCGTCAGCTATGAGGACATAATTGAGGTCACGAATGAGATTCTCGAGTCGTCTTTGAGAAATCGTCAAATCACGCACGTAACAGTCATCGACACGGCAATGACCGAGAACGCCTCCACCGAGCTGAATGATTTTGTCGGCGACTTGCTTGCGCGCATCGGGAGCGACCACATTTTCGAGCGCCTCGACCTGCAAACTGTCACCACAGCCAAGTTCAAGAAGCGTCTGAACTCAAACATCGTCATCGTTGACAAAATGCGGGACTTTAGGAATTTCGTCAAGACTCTGACTCACCACACTTACAACTTTGGCGGTTTTTATGTTGTTTTGTTCAAGCGCGCGACGCTCGAGGAAGCTCACGAGGTTTTTCAGGCGCTTTGGGATTTTTACATTCACAACTTGAATCTCGTTCGAAGAGCCAATGACACGATTTTTGTCGAGACTTTTATTCCCTTTCGTCCTCAAAAATGCAACACAACCGAGCCAGTCGCTGTTGCCTCTTTCAGGCACAATGATTTCACCCTAAAACCCCACAACTTCTATAAAAAGAAATTCGAAAATTTTCACCAATGTCCGCTCAAGTTCACGACTTATGAGAGTCTCGGGCCCTCGATTGTTCGCAGGGATTTTCCGAACGGAACCTTTCACACCCAAGGTCGAGACGTTGACATTTACCATGCGCTCATCAAAATTTTCAACTTCAAGCCGGACATGCATTTTATCGAGGAGTACGGCGGTTGGGGTTACTTCAACCTAAACGGCACAGTGACGCACGGAATGGGCCGGGCGATAAGACGCGAGGCCGACTTCATCATCGGCGGCAACAACCTCAAGTACGACCGGTCGATAGCGATGAGTCACACTTACGGCTTTTATTTGGAGACTTTGGTGTTTCTGCTTCCTCCGAGTCGCGAGCTGAGCTCGTTCCGGAAGCTGGTGCAGCCATTTGACGACTACGTGTGGGTCTGCGTGGGAATAACCTTCCTGGTCACTGTCCTCGTGATCATCACCGTTCAGTTCCAGTCGAAGCAGATTCGCGACTTCGTCTACGGCACGAACGTTCGAAATCCGTGCATGAATGTCCTCACGGCGGTGGTTGGTGGGTGCCAGGAAAAGCTGCCGCGGAGAAACTTTTCCCGTTCGCTCCTCATGATGTTCTTGCTGTTTTGCATTGTTATTCGGTCGGTGTATCAGGGAGCGCTCTACAATCACTTGCAGCAGAGCGATCTCGAACCAGACCCGGCGACTGTCGACGAAATTGCCGACAGAAATTTGACTTTCTATGTGCTGGTCTCGTGGGATGAACTGACGCTGAACCACGTGTTTCAGGGCCGTCGGAAGCTCATTCAGGCACTGGAGCTACGGAATATGATGAACGACACGCTGAAGCCTGAGTTTAATGGAGCTTTGATGACTTTTTTGTCGGAGGTTCTCTACAGGAACAAGTTGAGGTCGCTTGAGGGCCTGCCACTGTTCAAAATATGCAAGGATTTTTACACAATGATCCCGATCGTCATCTGGCTACCGAAAAACAGCTACTTGGTTGAGTCCTTTAACATGCAGCTGCTGAGACTCGAGGCAGCCGGTCTCATCAAGTGGTGGCAGTCAAACTACGGCGACATGCGCTACTTTGCGGATAAAAACACCTTCGGCGGACCCAAAAGCCTCAAGCTGAGTCACTTGTCGGCAGTGTTCCAAATCTGGCTGTCGGCGTGTCTAACGGGCTTTGGAATATTTGTTTTTGAGATGATTTTTAGCGCCAAAAGGATCAGGATTTTGAGGGAGAAGCTTAGGTTTAGGAAATCTCAGAAAAGTGTCAAGAAGATTAGGGTAAAGAAGGCTGTGCCTGCAAAGCAATCGAAGGTT
Protein: 1248 (aa)
MPWLKAVLLLVLSFCSVSAYDEDVAEVTLDVINSAFGRQKLTSVTFIDAHVGEELRSVDDFVGELLAKIGSSHIIQIINLDTIVRTRFRRRLSSNVVIANKMRDFRNFASTLTHHTYDFGGFYVIVFKNATLEETHKIFQTLWDFYIYNLCLIREVGDQVLVETFFPFQPSKCNTTEPVIVAKHQNGEFVFKPTEYFPKKFQNFHQCPLKFSTYVSLGPSVIRRNFPNGSFELVGRDVDVRKALSESFNFKPERFFIEGYGGWGYYNANGTSTHGMGRAIRRQSDFILGGNNLKYDRSLAMSHSYGYFIDTLIVMLPPSQEVSSIYKLIRPLDNYVWICVLFSITMAMVVIVVIQFQSREIRNFVYGTNVRNPCMNLLTAIVGGCQEKLPRRNFSRSMLMMFLLFCIVIRSVYQGSLYNHLQKNDMEQDPQTLEEIAERNMTFYILISWDEMTVDNPIFKGRRVLVDPDPHRDMLNDTLKENFNGVLMTVISEVLYANKLRSLQGLPLFKVCKDHFTMIPVVMYFPKNSYLVEPFNMRLLWLESSGLIRWWQSNYAEMKYLASADIFSGPRSLRLTPLQLTLTTINSHEYLLMMCALVEEAPNTPLFVDNIYTLPAHSENFSRGLLAVSYEDIIEVTNEILESSLRNRQITHVTVIDTAMTENASTELNDFVGDLLARIGSDHIFERLDLQTVTTAKFKKRLNSNIVIVDKMRDFRNFVKTLTHHTYNFGGFYVVLFKRATLEEAHEVFQALWDFYIHNLNLVRRANDTIFVETFIPFRPQKCNTTEPVAVASFRHNDFTLKPHNFYKKKFENFHQCPLKFTTYESLGPSIVRRDFPNGTFHTQGRDVDIYHALIKIFNFKPDMHFIEEYGGWGYFNLNGTVTHGMGRAIRREADFIIGGNNLKYDRSIAMSHTYGFYLETLVFLLPPSRELSSFRKLVQPFDDYVWVCVGITFLVTVLVIITVQFQSKQIRDFVYGTNVRNPCMNVLTAVVGGCQEKLPRRNFSRSLLMMFLLFCIVIRSVYQGALYNHLQQSDLEPDPATVDEIADRNLTFYVLVSWDELTLNHVFQGRRKLIQALELRNMMNDTLKPEFNGALMTFLSEVLYRNKLRSLEGLPLFKICKDFYTMIPIVIWLPKNSYLVESFNMQLLRLEAAGLIKWWQSNYGDMRYFADKNTFGGPKSLKLSHLSAVFQIWLSACLTGFGIFVFEMIFSAKRIRILREKLRFRKSQKSVKKIRVKKAVPAKQSKV
| Type | Start | End | Length |
| CDS |
154 |
531 |
378 |
| CDS |
722 |
1484 |
763 |
| CDS |
1789 |
2513 |
725 |
| CDS |
2584 |
2735 |
152 |
| CDS |
3495 |
3681 |
187 |
| CDS |
3740 |
4505 |
766 |
| CDS |
4573 |
5345 |
773 |
| intron |
532 |
721 |
190 |
| intron |
1485 |
1788 |
304 |
| intron |
2514 |
2583 |
70 |
| intron |
2736 |
3494 |
759 |
| intron |
3682 |
3739 |
58 |
| intron |
4506 |
4572 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001650794 |
hypothetical protein AaeL_AAEL015150 [Aedes aegypti] gb|EAT32642.1| conserved hypothetical protein [Aedes aegypti] |
1e-55 |
| InterPro |
IPR001320 |
Ionotropic glutamate receptor |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
1.8e-20 |
| Pfam |
PF06912.6 |
Protein of unknown function (DUF1275) |
0.094 |
| Pfam |
PF04995.9 |
Heme exporter protein D (CcmD) |
0.0035 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.13165 |
| Pn.02439 |
| Pn.02440 |
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP013520 |
| A. aegypti |
AAEL014688 |
| P. vanderplanki |
Pv.10769 |
| P. vanderplanki |
Pv.10770 |
| A. aegypti |
AAEL015149 |
| P. vanderplanki |
Pv.10771 |
| P. vanderplanki |
Pv.10772 |