MidgeBase gene description page [Pn.02424]
Outline
| Gene ID | Pn.02424 |
| Type | Protein coding gene |
| Scaffold | PnScaf2048 |
| Start | 12007 |
| End | 15993 |
| Direction | + |
Sequence
Transcript: 1443 (bp)
ATGTCGACGCTCGGACGATGCATTACAATTGACAATATCAATCCGTGCATAAAAACCATGGAATATGCGGTGAGAGGACCGCTCGTGATTCGCGCCGCAGTGATTGAGAAAGAGTTGGAACAGGGCGTAAAGAAACCATTTACTGAAGTCATACGAGCGAATATCGGCGACTGCCATGCCATGGGTCAAGTGCCTATCACATTCATACGTCAAGTGCTGGGGCTGTGCGTTTATGAGAAGCTCTTCGACGACCCATCGATTCCCTCCGATGCGAAGCAGCGAGCGCGTGACATCTTGAACGGTTGCAAGGGCGGTTCGCTCGGCTCCTACTCCGACTCTACCGGCATCGAGGTGATTCGCAAGCACTGTGCCGAGTACATTCAGAGACGTGACGGCATCAAATCGGATCCGAACGACATCATTTTGTCGGCCGGTGCGTCCGGCAGCATCAAGGCCGTGCTCGCCCTCCTGCGCTGTGATGTTGGAGGAAAGCGACCCGGCGTGATGGTCCCGATTCCGCAATATCCGCTTTACTCCGCCACAATCGCCGAGTTCGACATGGAGCAAATCGGATACTACCTGGACGAGTCGAAGCAGTGGGGCTTGGGCATCGAGGAGCTGCAGAGGTCGATCGAGGAGGCGAAGAAGGTGTGCGCACCGCGAGCAATTGTCATCATCAATCCGGGCAATCCGACCGGACAGGTTCTGACGAGGGAGAACATCGAGGCGATCATCAAGTTCGCGTACAAGGAGAAGCTTTTCATCTTCGCTGACGAGGTGTATCAGGACAACATTTATGCGGCCGGCTCGAAGTTCTACTCGTTCAAAAAGGTGCTGACGGAGCTCGGCGAGCCCTACTCGAAAATGGAGATGGGAAGCTTCATGAGCTGCTCGAAGGGCTACATGGGAGAGTGCGGCATCCGAGGCGGCTACTGTGAGCTCATCAATGTGTGTCCCGAGGTGAAGGCAGCTCTCAACAAATCCATATCAGCACAACTGTGCCCCACCACAATCGGTCAAGCGTGCATCGATTGTGTCGTCAATCCACCACAGCCGTCGGAGCCGTCTTATGAACTCTTCATGAAGGAGAAGAACGGAGTGCTGCAGTCGCTCAAGGAGCGCGCCGAGATGGTTGCATCAACCTTTAACTCGATCGAGGGCTTCAGCTGTAATCCCGTTCAAGGAGCCATGTACTCTTTCGTGAGACTACACCTTCCGCCAAAGGCCATCGAAGCAGCGAAGAAGGCAGGCCAAACACCCGACACATTCTACGCGTTCCAGCTGCTCGAAAACACTGGAATTTGCATCGTTCCCGGTTCAGGATTTGGACAGCAGCCTGGCACTTATCATTTCAGAACAACAATTCTTCCGCAAACGGAAAAGCTCAAGCACATGTTGGAACTTTTCCGTAAATTCCACGAAAAATTCCTCGCGGAATACAAA
Protein: 481 (aa)
MSTLGRCITIDNINPCIKTMEYAVRGPLVIRAAVIEKELEQGVKKPFTEVIRANIGDCHAMGQVPITFIRQVLGLCVYEKLFDDPSIPSDAKQRARDILNGCKGGSLGSYSDSTGIEVIRKHCAEYIQRRDGIKSDPNDIILSAGASGSIKAVLALLRCDVGGKRPGVMVPIPQYPLYSATIAEFDMEQIGYYLDESKQWGLGIEELQRSIEEAKKVCAPRAIVIINPGNPTGQVLTRENIEAIIKFAYKEKLFIFADEVYQDNIYAAGSKFYSFKKVLTELGEPYSKMEMGSFMSCSKGYMGECGIRGGYCELINVCPEVKAALNKSISAQLCPTTIGQACIDCVVNPPQPSEPSYELFMKEKNGVLQSLKERAEMVASTFNSIEGFSCNPVQGAMYSFVRLHLPPKAIEAAKKAGQTPDTFYAFQLLENTGICIVPGSGFGQQPGTYHFRTTILPQTEKLKHMLELFRKFHEKFLAEYK
| Type | Start | End | Length |
| CDS |
12007 |
12080 |
74 |
| CDS |
12157 |
12205 |
49 |
| CDS |
12764 |
12823 |
60 |
| CDS |
12916 |
12945 |
30 |
| CDS |
14365 |
14494 |
130 |
| CDS |
14572 |
15431 |
860 |
| CDS |
15751 |
15990 |
240 |
| intron |
12081 |
12156 |
76 |
| intron |
12206 |
12763 |
558 |
| intron |
12824 |
12915 |
92 |
| intron |
12946 |
14364 |
1419 |
| intron |
14495 |
14571 |
77 |
| intron |
15432 |
15750 |
319 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001660470 |
alanine aminotransferase [Aedes aegypti] gb|EAT38206.1| alanine aminotransferase [Aedes aegypti] |
0.0 |
| InterPro |
IPR004839 |
Aminotransferase, class I/classII |
|
| InterPro |
IPR015424 |
Pyridoxal phosphate-dependent transferase, major domain |
|
| InterPro |
IPR001176 |
1-aminocyclopropane-1-carboxylate synthase |
|
| InterPro |
IPR015422 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 |
|
| InterPro |
IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
|
| Gene Ontology(BP) |
GO:0042218 |
1-aminocyclopropane-1-carboxylate biosynthetic process |
|
| Gene Ontology(BP) |
GO:0009058 |
biosynthetic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0016740 |
transferase activity |
|
| Gene Ontology(MF) |
GO:0030170 |
pyridoxal phosphate binding |
|
| Gene Ontology(MF) |
GO:0016847 |
1-aminocyclopropane-1-carboxylate synthase activity |
|
| Pfam |
PF01212.16 |
Beta-eliminating lyase |
0.015 |
| Pfam |
PF00155.16 |
Aminotransferase class I and II |
1.7e-38 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000378408 |
| P. vanderplanki |
Pv.10432 |
| M. musculus |
ENSMUSG00000022546 |
| P. humanus |
PHUM467330-PA |
| D. melanogaster |
FBgn0030478 |
| S. invicta |
SI2.2.0_03790 |
| C. quinquefasciatus |
CPIJ014256 |
| H. sapiens |
ENSP00000345282 |
| H. melpomene |
HMEL013763-PA |
| M. musculus |
ENSMUSG00000031700 |
| H. sapiens |
ENSP00000413804 |
| C. quinquefasciatus |
CPIJ017506 |
| H. sapiens |
ENSP00000433586 |
| B. mori |
BGIBMGA011983-TA |
| P. humanus |
PHUM470220-PA |
| T. castaneum |
TC012980 |
| D. plexippus |
DPOGS210346PA |
| A. aegypti |
AAEL009872 |
| A. gambiae |
AGAP000901 |
| D. plexippus |
DPOGS212734PA |
| N. vitripennis |
NV13995-PA |
| A. aegypti |
AAEL009875 |
| D. plexippus |
DPOGS210350PA |
| A. mellifera |
GB17641-PA |