MidgeBase gene description page [Pn.02383]
Outline
| Gene ID | Pn.02383 |
| Type | Protein coding gene |
| Scaffold | PnScaf2019 |
| Start | 61516 |
| End | 65936 |
| Direction | + |
Sequence
Transcript: 4272 (bp)
ATGATTTTGCACGTTGTCAATGCGCCCAAGACGGGCCCACTTCAATTCATTGCATACAGCGATGTATGCTACAGCACTTCGGAATCTCGACCGAGCAAAATTTATCTTCAATATATTCAACAATGGGGCATGCTCTTGATTGCTTCCGCGAATTGTGTCGACGTAAGCTTCTTGAGAATAAACAAGCCCGGCGATATTCCCGAATGGATCCAAGATTTTCCTAGCGATCAATTCCCCGCTGAACTCCCGCTAACACCCGACAAAGAAGAATCATTTCCGGTTGGTTTTGAGCTAGATACGGCGTGTTCAGGTCGTTTGTTGCAAGAAGATGGTAATAGTCGATTTCCAGTTATGCCAATGATACATTTGATCTCGAGCTATGGCATATTGTGTTCATTCTACCTCGTGAATACGACACCAACCTACGTCGACATTTGTTCTCCTCCACGTCCCATTGATCCGAGAATTCAAAGTCTTTTTACTGTTAACACTGTTCAAAGGGTTCCGGAATCAGTCACTCAGCCTAAAGAAGAGCCGAAACCTTCGCCGAAGTCAATTTCAGCAGCTCCCGTTGGTCATTTAACTCCGGAAAATTCTCAAAAACCAAATATTTTTGGATCGACGGCATTTGGAACTTCTTCGGTCTCGCAATCGTCAATTGGCCAATCGAATGCTTTTTCAGGGTTCACTCTGCCACCTACAACTGCTTCTTCAAATCAACAGCAAATTCAGCAAAAACCGATGGCGCAAGCAACAGCCATGCAGCAGCCATTCCAGATAAAACCAAATATAACCGTACCAGCATCTACGTCCACCACAGCTGCAAATTTAAGCAATCAGCCATTAATCTCTATCCCTCCTTCTTACAATTCGCCAGCTTCACAACTAAAATCCGATTCCAAGGAAAATTCAAGTGGAGGCGATAAGAAAATTGATGCGGAAGATGAACAAGTGTATGTCAAAATGATTCACGATGAAATAAAGGCATTCGAGCTGGAGCTGAACTTTATTATGGAAAAGTCAAGGTCACTAAAGGTAAACATTGGTACAAGAGAAGAGTCGGCAGAGATGCGGCGCCAGTTGGAGGAGCTTGATGATTTGAAAAAGGAAGCGACTGAAACAGTAGATTCACTTCGAAGCGACGTTCAAACCAATCGTCTTGTCCTCACCGAAATGTTCTCGATGGTTTACGAAGCGAAAGCAAAATGTGATCAGGCAAACAACGAGAAATCGATAATAATGACAACGACATACGATCGTACAAGCAAGAGGACATTAGAGAAATTAAAGAAAATGATAACACAATGTGAAATACAAGTTCAAGTTGGTGTTCAATTATTAAACAGTCAATGGGCAAATTATCAAGATACGCTTAGCAAGAACAAAAAAAATAAGATGCATATACCGAGCCTAGAAGGAGTTTATCAAACACTTACAAAACAACAGGAAATAATTTACAATCTGAATGGAAAAATCAAAATGCTCAAGTTAAAGTTGGGCATTTTCGATGACATCAAAAAGCAAAATACAAACGCAACAATCGACTCGCTCTCTGATTCAATCATTTCAATGTCTCTCGTAGATCAGGTTCAAAATGAGCAATGCAAGTTGACTGAGAAAAAATTAAAGAATTTAAAAAATTATTTAGAAGGGCGAGATGTTGTTACAATTAAGCCGCAGCGACCACAGCTGCCTGGTCTAAATTCGGAAATTATTATCGAAAAAAAAATCAAGGCTATGAAGAGCTTGAAGAAACCAGAGATTAAGAAACATCAAGATGCAAAGCCTCAAAAACCAAACCAAATGTCTGCGATTCAGCCAAATATTCCATCGACCGTTCAGGGCATTTCTTTGAAGCATCAGCAAACGGAATCTGTTTTTAATCTGACTCAGCAATCCCTAAAGAGTTCACCATTCACTGCGATGCCAACTGCTACAACTTCAACGCAACAACCGCAAACACAAGCCTCGTTGACTTTCGGAAAGAAAACTGAAGAATCACAACCACAGCAGCAAAAAGCTCAAACCAAGCCAGCATTTTCTTTTGGACAAGCACCGTCTCAGCCATTTTCACTCAATTTAGGAGGAAATGCGTCGAGCATGTCTCAGCCTTCCTTTACGTTCGCGTCGACATCACTGGTCGCAAATGCAGACAAAAAGAAAGAAGAAGCAGTTGTTGCAAAATTTCTACCTCAGGCAGAAAAGCAAGAAACAGGGAAACCCACCAAGCCTCCATCGACAATCGCTAATGCAAACATTAGTGTGTCCGCGAATTTTTCATTACCTCTACCTCCGAAAACTTCGTCTGTTTGCACGCAGAAAGAATTGCAAAAAGTGGAAGATAAGAAAGCCGATGATGCCAAAGTACCTACTACGAATGAGACAACATCGTTCACCTTTTCACTGTCATCAAAAGGAAAAGAGTCGAATTCAAATAAACCGACAATTGCTGCCGTTGCTCCGACAGATGGAATTTCATTCGGATCTTTATCGTCATCAAGCCCTACAGCCACTTCAGATACAATAAAAAATGCATTTTCCTTTGGAGCCTCTCAAAATTCATTTAGCTTTGCCAGCGTAGGAAAACCTACTGAAACTAAAACATCTACTAGCGCAGCTGGTGGATCTATTTTTGGTGGAACTGCTAGTGCACCATTCAGTGGATTTTCACTAAATCTTGGCGATTCCAACAAGTCAACGACTTCAACTTCCAGTTTTGGTCCTCTTTCTGCAGTCAAAACGACAGAAGAAACAAAAACCACATCTGCAGCAGCAAGTTCAATCCCGACTTCAACTACAACTGCATCTTCGTTCTCTTTTGCAGGAATAAATGCCCAGACAACATTGAACGACGCGAAAGCTTCTACAACCGCTGCCTCATCGTTGGTACCATCAACATCAACCATCTCGTCAGCAGTCACCATCACTGCTCCTTCACTATTTGCCACCAATAATGCAATTAGTACGACAAACATCACAACATCAATAACATCAACAGTTTCGTCTTCTTCGACTACTACTGACTCCGAGTTGTCAGGTCTTAAAATTTGTTCGCCTGCAACTGTTTCATCGAAACCACAAACGTTGCAAGCAACGCCAACTGGAAGCATTTTTAGTGGTTCAAATGCATCAAAATCCGATTCTTCTTCGATTTTTGGTTCAAATTCCTTCAATACAGCCTTTAATACTAGTAATGCAACAGGAAAAAATCCTATTTTGGGAATTGCTCCGTCTTCGGCTGCAACAACTTCACCTGCGATTTCAACTACTAGCACTCAATCCACTACTTCTTCAATATTTGGTGCACAAACATCTACCTCTACATCGTCTCCAGGTCTTTTCGGTTCCCTCTCAATTGATTCAAGCAAAACGCCTGCGTCTGGGATTTTTGGAGGCTCTTTAGTGAAACCCGATCAATCTGTCTTTGGTCAGGTATCCACGGCTACTTCAAGTACTTCTGATAGCATTTTTGGAAAGTCCTCAACAACGCCTAGCATTTTTGGAGGTCAAACAGCAACAACTACTCCTTCTAACATTTTTGGAGCAGCTCAGCCGACGTCCTCCTCGTCGACAAATATTTTTGCGCAAGCAACCCAAGTACAACAGTCTTCAGGTGGCTCAATTTTCGGACAAACAACTACGAGCAATGCCGATTCGGGTTCGGTTTTTGGATCGAGCTCGTTCGCCGGGCCGCTCAGCAGTACAACATCAGGCGGTAGCATTTTTGGAGGAACCACTGCAACACAAAGTCAATCACCTTTCGGTTCTGCAAGCGTTTTTGGCTCGGGCGGACAACAGTCAACCCAAAGCTCATCAATTTTCGGTGGTAATGCTTTTTCTGGCACTCAAAGTCCATCGACTAATATTTTCGGAAGTGCTTCAACCGGTGCAGTCTCTCCACAAGCAACAAGTCCATTTGGATCTGGAAACATTTTCACACAGCAGCAACAGAGTCCAAATCAACCTGTTTTTGGAGGAAATGCGACGTTTTCAAATGTTTTTGGGCAAAGCAGCACAACAGGTTCAATATTTGGACAACAACAACAAAGTCAGCCAGTCTTTGGAGGAAATGCAACATTTGGAAGTCCAAAGGCAAGCATTTTTGGTTCGTCAACGGTATCACCGCAGCAGAGTTCTGGCCAAGCGAACATTTTCGAGCAACTCGGCTCTCAGCAAAGTGGCAATTTGTTTGGAAGTCTCGCTACTCAGCAGCAACAACCCCCACAGCAGCAAGCTCCTGGCTTCTCTGGCAGTGCATTTTCAAGCTGGCGT
Protein: 1424 (aa)
MILHVVNAPKTGPLQFIAYSDVCYSTSESRPSKIYLQYIQQWGMLLIASANCVDVSFLRINKPGDIPEWIQDFPSDQFPAELPLTPDKEESFPVGFELDTACSGRLLQEDGNSRFPVMPMIHLISSYGILCSFYLVNTTPTYVDICSPPRPIDPRIQSLFTVNTVQRVPESVTQPKEEPKPSPKSISAAPVGHLTPENSQKPNIFGSTAFGTSSVSQSSIGQSNAFSGFTLPPTTASSNQQQIQQKPMAQATAMQQPFQIKPNITVPASTSTTAANLSNQPLISIPPSYNSPASQLKSDSKENSSGGDKKIDAEDEQVYVKMIHDEIKAFELELNFIMEKSRSLKVNIGTREESAEMRRQLEELDDLKKEATETVDSLRSDVQTNRLVLTEMFSMVYEAKAKCDQANNEKSIIMTTTYDRTSKRTLEKLKKMITQCEIQVQVGVQLLNSQWANYQDTLSKNKKNKMHIPSLEGVYQTLTKQQEIIYNLNGKIKMLKLKLGIFDDIKKQNTNATIDSLSDSIISMSLVDQVQNEQCKLTEKKLKNLKNYLEGRDVVTIKPQRPQLPGLNSEIIIEKKIKAMKSLKKPEIKKHQDAKPQKPNQMSAIQPNIPSTVQGISLKHQQTESVFNLTQQSLKSSPFTAMPTATTSTQQPQTQASLTFGKKTEESQPQQQKAQTKPAFSFGQAPSQPFSLNLGGNASSMSQPSFTFASTSLVANADKKKEEAVVAKFLPQAEKQETGKPTKPPSTIANANISVSANFSLPLPPKTSSVCTQKELQKVEDKKADDAKVPTTNETTSFTFSLSSKGKESNSNKPTIAAVAPTDGISFGSLSSSSPTATSDTIKNAFSFGASQNSFSFASVGKPTETKTSTSAAGGSIFGGTASAPFSGFSLNLGDSNKSTTSTSSFGPLSAVKTTEETKTTSAAASSIPTSTTTASSFSFAGINAQTTLNDAKASTTAASSLVPSTSTISSAVTITAPSLFATNNAISTTNITTSITSTVSSSSTTTDSELSGLKICSPATVSSKPQTLQATPTGSIFSGSNASKSDSSSIFGSNSFNTAFNTSNATGKNPILGIAPSSAATTSPAISTTSTQSTTSSIFGAQTSTSTSSPGLFGSLSIDSSKTPASGIFGGSLVKPDQSVFGQVSTATSSTSDSIFGKSSTTPSIFGGQTATTTPSNIFGAAQPTSSSSTNIFAQATQVQQSSGGSIFGQTTTSNADSGSVFGSSSFAGPLSSTTSGGSIFGGTTATQSQSPFGSASVFGSGGQQSTQSSSIFGGNAFSGTQSPSTNIFGSASTGAVSPQATSPFGSGNIFTQQQQSPNQPVFGGNATFSNVFGQSSTTGSIFGQQQQSQPVFGGNATFGSPKASIFGSSTVSPQQSSGQANIFEQLGSQQSGNLFGSLATQQQQPPQQQAPGFSGSAFSSWR
| Type | Start | End | Length |
| CDS |
61516 |
61519 |
4 |
| CDS |
61591 |
64456 |
2866 |
| CDS |
64532 |
65933 |
1402 |
| intron |
61520 |
61590 |
71 |
| intron |
64457 |
64531 |
75 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001976320 |
GG20085 [Drosophila erecta] gb|EDV56720.1| GG20085 [Drosophila erecta] |
5e-68 |
| InterPro |
IPR025574 |
Nucleoporin FG repeat |
|
| Pfam |
PF13634.1 |
Nucleoporin FG repeat region |
7.2e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.10324 |