MidgeBase gene description page [Pn.02362]
Outline
| Gene ID | Pn.02362 |
| Type | Protein coding gene |
| Scaffold | PnScaf1980 |
| Start | 16047 |
| End | 21001 |
| Direction | - |
Sequence
Transcript: 1413 (bp)
ATGTTTAGTCCCGAGTATGAGAAGCGCTTGCTCAAGCACTGCAGTCCGTCCGCGCGACGATTGTTTGTCGCACCGGAGTCATCATCACCCTCAGACCGATTTATTCCATGCAGAGCAAACAACAATTGGGAAACAAATTATTCTACGTTGACAAAATCCAATGAGAACTCATCACAATCGAAAAAGCAGCGAGAATGTGGTGAATCAGCTCGCGACAGCCTCGCGTATTCGTGTCTACTGAAGAATGAATTACTCGGTGCTACGATAGAGGACATTAAGAATGTCTCGGACGAAAATAAAGTTCTTTCAAACAGTAATCGAGGTCTCTTCAAATATCAATCGCCCTCCAGACAGGACTTTACCGATCCGTGTCCATACTCGCTGTCGCCCGTGACGCTCAAAAGTCAGAAGCTTCTTCGATCTCCGCGCAAGGCGACACGAAAAATTTCACGCATTCCCTTCAAAGTACTCGACGCACCAGAGTTGCAGGATGATTTCTACTTAAATCTCGTCGACTGGTCAGCACAAAACGTACTAGCTGTAGGACTTGGCAGTTGCGTGTACTTATGGTCTGCATGTACGAGTCAAGTCACTCGGCTGTGCGACTTGAGCAACGATGGAAACACAGTGACATCGGTTTCGTGGAGCGAACGTGGACAGCAATTAGCTGTCGGAACACATCATGGCTATGTAACCGTTTGGGATGTACAAGCGAGCAAACAGGTGAATAAACTCAACGGGCATTCGGCGCGTGTAGGTGCACTGGCGTGGAATGGTGATATTCTGTCTTCTGGATCGCGAGATCGATTGATTATGCAGCGAGATGTGCGAACTCCACCCATGACCTCTGAACGTCGCCTCGAGGGACATCGACAAGAGGTGTGCGGTCTCAAGTGGTCGCCCGACAATCAATATTTAGCAAGCGGAGGCAACGATAATCGGCTTTATGTATGGAACCAGCACGCAGTGACTCCCGTCCAGTCGTACACCGAGCATATGGCTGCCGTCAAAGCGATAGCTTGGTCTCCTCACCATCACGGGTTGCTGGTGTCTGGAGGAGGAACTGCTGATCGCTGCATTCGATTTTGGAATACGCTCACCGGGCAGCCAATGCAATGCGTCGACACTGGGTCGCAAGTTTGCAATTTAGCTTGGTCCAAGCACTCTTCGGAGCTCGTATCGACTCACGGCTACTCGCAAAATCAGATTCTCGTGTGGAAGTATCCCTCGCTGACACAAGTTGCGAAGTTGACTGGTCACTCCTACCGCGTGTTGTACTTGGCTCTAAGTCCTGATGGCGAAGCCATTGTTACTGGTGCTGGCGACGAGACACTTAGATTTTGGAATGTGTTTAGCAAGGCTAGAAGTCAGAAAGAAAACAAGAGCGTTCTAAATCTGTACGCAAACATCCGA
Protein: 471 (aa)
MFSPEYEKRLLKHCSPSARRLFVAPESSSPSDRFIPCRANNNWETNYSTLTKSNENSSQSKKQRECGESARDSLAYSCLLKNELLGATIEDIKNVSDENKVLSNSNRGLFKYQSPSRQDFTDPCPYSLSPVTLKSQKLLRSPRKATRKISRIPFKVLDAPELQDDFYLNLVDWSAQNVLAVGLGSCVYLWSACTSQVTRLCDLSNDGNTVTSVSWSERGQQLAVGTHHGYVTVWDVQASKQVNKLNGHSARVGALAWNGDILSSGSRDRLIMQRDVRTPPMTSERRLEGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNQHAVTPVQSYTEHMAAVKAIAWSPHHHGLLVSGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYLALSPDGEAIVTGAGDETLRFWNVFSKARSQKENKSVLNLYANIR
| Type | Start | End | Length |
| CDS |
16050 |
16321 |
272 |
| CDS |
16393 |
16629 |
237 |
| CDS |
16700 |
16880 |
181 |
| CDS |
17157 |
17291 |
135 |
| CDS |
17403 |
17636 |
234 |
| CDS |
20508 |
20748 |
241 |
| CDS |
20889 |
21001 |
113 |
| intron |
16322 |
16392 |
71 |
| intron |
16630 |
16699 |
70 |
| intron |
16881 |
17156 |
276 |
| intron |
17292 |
17402 |
111 |
| intron |
17637 |
20507 |
2871 |
| intron |
20749 |
20888 |
140 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001649222 |
cell division cycle 20 (cdc20) (fizzy) [Aedes aegypti] gb|EAT44141.1| cell division cycle 20 (cdc20) (fizzy) [Aedes aegypti] |
0.0 |
| InterPro |
IPR019775 |
WD40 repeat, conserved site |
|
| InterPro |
IPR017986 |
WD40-repeat-containing domain |
|
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR001680 |
WD40 repeat |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00400.27 |
WD domain, G-beta repeat |
1.2e-37 |
| Pfam |
PF08662.6 |
Eukaryotic translation initiation factor eIF2A |
1.5e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_04616 |
| N. vitripennis |
NV10012-PA |
| H. sapiens |
ENSP00000467967 |
| H. sapiens |
ENSP00000321800 |
| C. quinquefasciatus |
CPIJ013831 |
| B. mori |
BGIBMGA007924-TA |
| T. castaneum |
TC001036 |
| D. plexippus |
DPOGS208818PA |
| P. humanus |
PHUM226320-PA |
| A. aegypti |
AAEL004480 |
| A. mellifera |
GB18125-PA |
| H. sapiens |
ENSP00000378529 |
| D. melanogaster |
FBgn0262699 |
| P. vanderplanki |
Pv.00412 |
| A. gambiae |
AGAP002114 |
| M. musculus |
ENSMUSG00000020235 |
| H. sapiens |
ENSP00000410369 |
| H. melpomene |
HMEL015096-PA |