MidgeBase gene description page [Pn.02356]
Outline
| Gene ID | Pn.02356 |
| Type | Protein coding gene |
| Scaffold | PnScaf1977 |
| Start | 2725 |
| End | 4518 |
| Direction | - |
Sequence
Transcript: 1215 (bp)
ATGTCGAGCATTAAGTGCATCGCCATCGGTGACGAGACGGTTGGCAAGACGAGCATCTTTAAGCGCTGCATAAGCAACGAGTTTGTCGGTCTGCAAACGTGCAAGACAGTCTACGACAACTACTCGGCGATTGTTGAGGCGAACGGCAAGGCGTTTCGCTTCGAAGTGTTGGATGTGGCCTGCCACGAGGAGTACGACCATTGGCGCCTCAAGCATTATGAAAACGTGAATGTTTGCATTTTGTGCTTTTCCCTGGTCGACCCGATCTCTTTTAGGAGAATTCGATCGAGATGGTATCGAGAAACTCAGAAATTCGCTTCAAATGCTGCGATCCTCTTGATAGGAACGAAACTTGACCTCAGAAACGACAGAGACTATGTGAAGCAAATGAAAGAGAAGAAAGTGGTTCCGATTTCTTACAGTGAGGGCTTGAAACTGTCGAAGCAGATCGGTGCACTTAGCTATTTGGAGGTGTCCGCCAAAACTTGTGAAAACATCAATCGGCGAGTGAGGGAGGGAATTTCATCTCATTCTGATTTGTACGCGAGAGAAGTTAGTTGCTTCAAACATGCAAGCAGTCAAGTGTGTAGTCGTTGGCGACAGGTAACCGAAACCCATCATATTTTGGTGCAAAAAGTAATAAAAGTTGTTCTTTTCATCGGCAGCGCTGTCGGCAAGACCAGTCTGCTGATCACATACACGACAAACGTCTTTCCGAGTCAATACATTCCGACCGTCTTTGACAACTACTCGGTCAATATTTTGGTCGAAAAAAAACCGGTCAACCTTGGCCTTTGGGATACTGCCGGACAGGAGGAATATGATCGTTTGCGTCCACTGTCGTATCCCAACACTGATGTGTTCCTCCTCTGCTTCTCACTGGTCGATCCGAGGTGCTTTGAGAACATCAAGAGCAAGTGGGTGTCCGAAATTCGCCATCACTGCCCCGCTACCCCAATATTTCTCGTTGCAACGAAGCTCGATCTGCGCGACGATGCGAAAACAGTTAAGGAGCTCGCACAGAAGGGCAAAAAGCCGATTAGCCAGGAAATGGGAAGAAAACTGGCCAACGAGATAAATGCCTACAAATACATCGAGTGCTCATCTTGTACTCACAAAAACGTGGATTATCTCTTTGAGGAGGCGGTGAAATGTGCATTATATCCATCTAAGAATTCAAGTTTAAATGAAGAGAAAAGAAGATGTAAAATCTTC
Protein: 405 (aa)
MSSIKCIAIGDETVGKTSIFKRCISNEFVGLQTCKTVYDNYSAIVEANGKAFRFEVLDVACHEEYDHWRLKHYENVNVCILCFSLVDPISFRRIRSRWYRETQKFASNAAILLIGTKLDLRNDRDYVKQMKEKKVVPISYSEGLKLSKQIGALSYLEVSAKTCENINRRVREGISSHSDLYAREVSCFKHASSQVCSRWRQVTETHHILVQKVIKVVLFIGSAVGKTSLLITYTTNVFPSQYIPTVFDNYSVNILVEKKPVNLGLWDTAGQEEYDRLRPLSYPNTDVFLLCFSLVDPRCFENIKSKWVSEIRHHCPATPIFLVATKLDLRDDAKTVKELAQKGKKPISQEMGRKLANEINAYKYIECSSCTHKNVDYLFEEAVKCALYPSKNSSLNEEKRRCKIF
| Type | Start | End | Length |
| CDS |
2728 |
2889 |
162 |
| CDS |
2944 |
3197 |
254 |
| CDS |
3253 |
3547 |
295 |
| CDS |
3844 |
3921 |
78 |
| CDS |
3978 |
4231 |
254 |
| CDS |
4347 |
4518 |
172 |
| intron |
2890 |
2943 |
54 |
| intron |
3198 |
3252 |
55 |
| intron |
3548 |
3843 |
296 |
| intron |
3922 |
3977 |
56 |
| intron |
4232 |
4346 |
115 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EGG15500 |
RhoGAP domain-containing protein [Dictyostelium fasciculatum] |
1e-95 |
| InterPro |
IPR005225 |
Small GTP-binding protein domain |
|
| InterPro |
IPR001806 |
Small GTPase superfamily |
|
| InterPro |
IPR003579 |
Small GTPase superfamily, Rab type |
|
| InterPro |
IPR020849 |
Small GTPase superfamily, Ras type |
|
| InterPro |
IPR003578 |
Small GTPase superfamily, Rho type |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(BP) |
GO:0006184 |
GTP catabolic process |
|
| Gene Ontology(BP) |
GO:0007264 |
small GTPase mediated signal transduction |
|
| Gene Ontology(BP) |
GO:0015031 |
protein transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Gene Ontology(MF) |
GO:0003924 |
GTPase activity |
|
| Pfam |
PF00025.16 |
ADP-ribosylation factor family |
6.6e-13 |
| Pfam |
PF00009.22 |
Elongation factor Tu GTP binding domain |
0.00063 |
| Pfam |
PF00071.17 |
Ras family |
1.6e-82 |
| Pfam |
PF09439.5 |
Signal recognition particle receptor beta subunit |
0.0051 |
| Pfam |
PF08477.8 |
Miro-like protein |
3.1e-27 |
| Pfam |
PF04122.7 |
Putative cell wall binding repeat 2 |
0.13 |
| Pfam |
PF12937.2 |
F-box-like |
0.046 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes