MidgeBase gene description page [Pn.02353]
Outline
| Gene ID | Pn.02353 |
| Type | Protein coding gene |
| Scaffold | PnScaf1976 |
| Start | 215 |
| End | 16871 |
| Direction | + |
Sequence
Transcript: 978 (bp)
ATGGTCCCTGCAAAAGACGTTGAAAAACAAAATCCTTTGAACAAACTTGTTGAAACAAAAACATTTATGGCAAACTTTGAGAAAGGTTCCAGCTCTTTAATCCAGCACTTGCTTTTGGGAGACGAAGAAAATAAAAATAGACCTTCGGTGACTGTGAACCAACACGTAACAGAACTTGAACAAATTAATAACATTGATAATATTCATTTGCTGAGGAAAATTTTGGAAGCAATAACTTGTAACGATAACCGTGCAAAGGTAGAAGCCCGAATTCATCAGGTCATGGCTGATAATGAAGCATGTAGACCGGACTTGGATCAATTAAATTCTGACCTAGAAGATGATCTTCCATATAACGTCAGTGACAATCAAACAAATGATGGAACTAAGACTAAGATCAGTTCGAAAGTCAAACGGCAAGGAGGTAGAATCATTAAAACGACAACAGCAGAAGTTATTCGAAAATCATCAATAATGCAGCCACATAAAAAAGTATCGCCTTTCGAGAAATTTCGTCAACTCGACAGGCAAAATTCTATTCCTAACTCATCTTCACCTCGAACTCCAACAACGCCTACTACACCAGGAGGTTCAAGCAAAAGTGGACCTTTGTTTTCTTTCACGGACCCCACTCTTGCTAAAAAAGCTGCTAATGCAAAGGAAGCTCTGTTGCAATGGGCACAAATGAAAACGAAAGAATACGAGAACGTCAATATACAAAACTTCTCGACATCTTGGTCAGATGGATTAGCATTCGCCGCTCTTATACACCATTTTTTACCTGATGCATTTGACTACAGTAAATTAACTCCTAAAGAGAGACGACACAATTTCACTTTAGCATTCCGTGTAGCAGAAGAAAAGGCTGGAATCTGTCCTCTTTTGGATGTTGATGATATGGTTGCTTATAAAAAACCTGATTGGAAGTGTGTGTTTTGCTATGTTCAGTCAATATACCGTAGGTTTAAGGATGAAATA
Protein: 326 (aa)
MVPAKDVEKQNPLNKLVETKTFMANFEKGSSSLIQHLLLGDEENKNRPSVTVNQHVTELEQINNIDNIHLLRKILEAITCNDNRAKVEARIHQVMADNEACRPDLDQLNSDLEDDLPYNVSDNQTNDGTKTKISSKVKRQGGRIIKTTTAEVIRKSSIMQPHKKVSPFEKFRQLDRQNSIPNSSSPRTPTTPTTPGGSSKSGPLFSFTDPTLAKKAANAKEALLQWAQMKTKEYENVNIQNFSTSWSDGLAFAALIHHFLPDAFDYSKLTPKERRHNFTLAFRVAEEKAGICPLLDVDDMVAYKKPDWKCVFCYVQSIYRRFKDEI
| Type | Start | End | Length |
| CDS |
215 |
352 |
138 |
| CDS |
5624 |
5707 |
84 |
| CDS |
6564 |
6639 |
76 |
| CDS |
7438 |
7521 |
84 |
| CDS |
14967 |
15038 |
72 |
| CDS |
15120 |
15210 |
91 |
| CDS |
16000 |
16159 |
160 |
| CDS |
16307 |
16352 |
46 |
| CDS |
16573 |
16678 |
106 |
| CDS |
16748 |
16868 |
121 |
| intron |
353 |
5623 |
5271 |
| intron |
5708 |
6563 |
856 |
| intron |
6640 |
7437 |
798 |
| intron |
7522 |
14966 |
7445 |
| intron |
15039 |
15119 |
81 |
| intron |
15211 |
15999 |
789 |
| intron |
16160 |
16306 |
147 |
| intron |
16353 |
16572 |
220 |
| intron |
16679 |
16747 |
69 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001662563 |
hypothetical protein AaeL_AAEL012429 [Aedes aegypti] gb|EAT35395.1| conserved hypothetical protein [Aedes aegypti] |
1e-73 |
| InterPro |
IPR001715 |
Calponin homology domain |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00307.26 |
Calponin homology (CH) domain |
5.8e-22 |
| Pfam |
PF05297.6 |
Herpesvirus latent membrane protein 1 (LMP1) |
0.065 |
| Pfam |
PF11971.3 |
CAMSAP CH domain |
3.7e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA009829-TA |
| H. melpomene |
HMEL014810-PA |
| P. humanus |
PHUM318990-PA |
| N. vitripennis |
NV11840-PA |
| S. invicta |
SI2.2.0_07460 |
| P. vanderplanki |
Pv.07223 |
| A. mellifera |
GB18827-PA |
| A. gambiae |
AGAP000906 |
| D. plexippus |
DPOGS205692PA |
| A. aegypti |
AAEL012429 |
| T. castaneum |
TC002172 |