MidgeBase gene description page [Pn.02328]
Outline
| Gene ID | Pn.02328 |
| Type | Protein coding gene |
| Scaffold | PnScaf1948 |
| Start | 28520 |
| End | 33463 |
| Direction | + |
Sequence
Transcript: 2709 (bp)
ATGGCAGAGGGAACAAATCCATACCAATATTTGGAGAAGTCGATAGTTCTGAATGGGCAGACATATTGCTACTACGATGTCTCGCACTTTGACCAGTTCACCAAGCTGCCCTTCTCGATTCGCGTTCTGCTGGAATCTGCAATACGAAACTGCGACAACTTCCATGTCAGCGAGGGTCACGTTCAGAGAATTTTAAATTGGGCGCAATACAAGGGAGACGGCGCGACCAACGCCAACGAGCAAGACCTTGAGATTCCGTTCAAGCCGGCTCGCGTCATTCTTCAAGACTTCACGGGCGTTCCCGCTGTCGTCGACTTTGCTGCGATGCGCGACGCTGTACTGAAGTTGGGAGGAGATCCAGAGAAAATTAATCCCATCTGTCCAGCGGATCTCGTCATCGATCATTCCGTTCAGGTGGACTACTCGAGCTCACCCGATGCACTTGCGAAAAACCAGGATCTCGAGTTCCAGCGGAACCGCGAGCGATTCCTCTTCCTCAAGTGGGGCTCGACCGCCTTCAACAACATGCTTATCGTTCCGCCAGCAAGCGGTATTGTGCACCAAGTGAACTTGGAGTATCTGGCGCGTGTGGTTTTTGCGGAGAAGAAGGGCGACAAGGAGTACTTGTATCCGGACTCTTGTGTTGGCACCGACTCACACACCACCATGATCAACGGCATCGGCGTGCTTGGAAACGGAGTTGGTGGCGTGGAGGCGGAAGCTGTCATGTTGGGCCAGAGCATATCATTGCTCCTCCCCGAGGTCATCGGCTACAAGCTCGACGGCCAGCTCAACCCGTACATCACCTCCACCGATCTTGTACTAACCATCACGAAAAACTTGCGACAGCTGGGTGTCGTCGGAAAATTTGTGGAGTTTTTCGGACCGGGCGTCTCATTCCTCTCGATCGCCGACCGCGCCACAATCTCGAACATGTGTCCAGAGTTCGGTGCAACGGTCGCCTACTTTGCAGTCGATCGCCGATCCATCGACTACCTTCGCCAAACGAACCGCAGCGAGGAAAAGATTAACATTGTGGAGCAGTACTTGAAGACAACGAAGCAATTTAGAGATTATGACGATGCCTCGCAGGACCCAATTTACACCAAAGTTGTGACTCTTGACCTGTCCACCGTCGTCTCGAGCTTATCAGGGCCGAAAAGACCGCACGACCGAGTCTCGGTCTCACAAATGAAGGAGGATTTCGCTGCCTGCCTGGTCAACAAGGTGGGCTTTAAGGGCTACGAGTTGTCGCCGGATCAGCTGAGTGCCACTGGCTCCTTCACTTGGGAGGACGGCAAGGAGTACACTTTGAAGCACGGCTCCGTCATTATCGCCGCCATTACCTCATGCACCAACACCAGCAATCCAACTGTCATTTTGGGTGCTGGTCTTCTCGCTCGAAATGCCGTCCGGCTGGGCCTGAGCGTTGCGCCTTACATCAAGACGAGTCTCTCGCCAGGATCGGGCGTTGTGACTCACTACTTGCGCGAGTCGGACACGATTCCGAGTCTTGAGAAGTTGGGCTTCCACATTGTCGGCATGGGCTGCATGACGTGTATCGGCAACAGCGGTCCAATCAACGAGAATATCGCCTCGGTAATCGAGCAGAACGGCCTCGTCTGCTGCGGCGTTCTCTCGGGCAACCGCAACTTCGAGGGCCGAATCCATCCATTAACACGCGCCAACTATTTGGCGAGTCCGTTGCTGGTAATCGCCTATGCGATCGCAGGAACCGTTGACATAAACTTCGACGTGGAGCCGATTGGAAAGAGTCTGGACGGACGAGACGTCTACTTGAGGGATATTTGGCCTAGTCGCCAAGAGATTCAGGAGGTCGAAAAGAAATACGTCATTCCGGCGATGTTCAGAGATGTCTACGACAAAATCCAAGTAGGCTCCGAAAATTGGAGAAATCTCGTCGCGCCCGAGGGAAAGCTCTACCCGTGGGACGAGAGCTCTACCTACATCAAGCATCCGCCGTTCTTCGATGGCATGACTAGGGAGCTACCGATCAAGAAACCAATCATGAACGCTCGCGTTCTGCTCAACTTCGGCGACAGCGTCACAACCGACCACATCTCTCCGGCCGGCTCCATCGCCCGAAACTCGCCAGCCGCTCGCTATCTCACCGAGCGCAATCTCTTGCCAAAGGACTTCAACTCCTACGGCTCGAGACGCGGAAATGACGCAGTTATGGCGCGAGGAACATTCGCCAACATTCGTCTCGTCAACAAGCTCATGAAGCACGCCGGTCCGCGCACCATCCATTTCCCCTCGAACGAGGAAATGGACATCTTTGACTGTGCCGAACGCTACAAGGCCGAGAACGTTCCATTGGTAGTTTTGGCTGGAAAAGAATACGGCAGCGGTTCGTCCAGAGACTGGGCTGCGAAGGGACCATTTTTGCTTGGCATAAAGGCGGTCATTGCAGAGTCCTACGAGCGAATTCATCGATCAAATCTCGTCGGCATGGGAATTTGTCCTCTCCAATATTTACCTGGCCAGACGGCTGAGACTCTCGGGCTAACTGGCCACGAAATTTTCAACATTTTCATTCCTGACAACATTCGTCCTCTGCAGAACGTCGACGTCACCACCAATACGGGTATCAAGTTCCAAGTGCTCGCCCGCTTCGATACGGACGTTGAGATTCTCTACTATAAGCATGGCGGCATCTTGAACTTCATGATCAGGAAGATGATCGAG
Protein: 903 (aa)
MAEGTNPYQYLEKSIVLNGQTYCYYDVSHFDQFTKLPFSIRVLLESAIRNCDNFHVSEGHVQRILNWAQYKGDGATNANEQDLEIPFKPARVILQDFTGVPAVVDFAAMRDAVLKLGGDPEKINPICPADLVIDHSVQVDYSSSPDALAKNQDLEFQRNRERFLFLKWGSTAFNNMLIVPPASGIVHQVNLEYLARVVFAEKKGDKEYLYPDSCVGTDSHTTMINGIGVLGNGVGGVEAEAVMLGQSISLLLPEVIGYKLDGQLNPYITSTDLVLTITKNLRQLGVVGKFVEFFGPGVSFLSIADRATISNMCPEFGATVAYFAVDRRSIDYLRQTNRSEEKINIVEQYLKTTKQFRDYDDASQDPIYTKVVTLDLSTVVSSLSGPKRPHDRVSVSQMKEDFAACLVNKVGFKGYELSPDQLSATGSFTWEDGKEYTLKHGSVIIAAITSCTNTSNPTVILGAGLLARNAVRLGLSVAPYIKTSLSPGSGVVTHYLRESDTIPSLEKLGFHIVGMGCMTCIGNSGPINENIASVIEQNGLVCCGVLSGNRNFEGRIHPLTRANYLASPLLVIAYAIAGTVDINFDVEPIGKSLDGRDVYLRDIWPSRQEIQEVEKKYVIPAMFRDVYDKIQVGSENWRNLVAPEGKLYPWDESSTYIKHPPFFDGMTRELPIKKPIMNARVLLNFGDSVTTDHISPAGSIARNSPAARYLTERNLLPKDFNSYGSRRGNDAVMARGTFANIRLVNKLMKHAGPRTIHFPSNEEMDIFDCAERYKAENVPLVVLAGKEYGSGSSRDWAAKGPFLLGIKAVIAESYERIHRSNLVGMGICPLQYLPGQTAETLGLTGHEIFNIFIPDNIRPLQNVDVTTNTGIKFQVLARFDTDVEILYYKHGGILNFMIRKMIE
| Type | Start | End | Length |
| CDS |
28520 |
28526 |
7 |
| CDS |
28832 |
29025 |
194 |
| CDS |
29098 |
29424 |
327 |
| CDS |
29488 |
29968 |
481 |
| CDS |
30036 |
30189 |
154 |
| CDS |
30328 |
30331 |
4 |
| CDS |
30398 |
30457 |
60 |
| CDS |
31716 |
31961 |
246 |
| CDS |
32028 |
32187 |
160 |
| CDS |
32256 |
32354 |
99 |
| CDS |
32422 |
32876 |
455 |
| CDS |
32939 |
33460 |
522 |
| intron |
28527 |
28831 |
305 |
| intron |
29026 |
29097 |
72 |
| intron |
29425 |
29487 |
63 |
| intron |
29969 |
30035 |
67 |
| intron |
30190 |
30327 |
138 |
| intron |
30332 |
30397 |
66 |
| intron |
30458 |
31715 |
1258 |
| intron |
31962 |
32027 |
66 |
| intron |
32188 |
32255 |
68 |
| intron |
32355 |
32421 |
67 |
| intron |
32877 |
32938 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001659032 |
aconitase [Aedes aegypti] gb|EAT40025.1| aconitase [Aedes aegypti] |
0.0 |
| InterPro |
IPR018136 |
Aconitase family, 4Fe-4S cluster binding site |
|
| InterPro |
IPR001030 |
Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha |
|
| InterPro |
IPR000573 |
Aconitase A/isopropylmalate dehydratase small subunit, swivel |
|
| InterPro |
IPR015932 |
Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 |
|
| InterPro |
IPR015934 |
Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase |
|
| InterPro |
IPR015937 |
Aconitase/isopropylmalate dehydratase |
|
| InterPro |
IPR015928 |
Aconitase/3-isopropylmalate dehydratase, swivel |
|
| InterPro |
IPR015931 |
Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 |
|
| InterPro |
IPR006249 |
Aconitase/iron regulatory protein 2 |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0051539 |
4 iron, 4 sulfur cluster binding |
|
| Pfam |
PF00330.15 |
Aconitase family (aconitate hydratase) |
5e-127 |
| Pfam |
PF00694.14 |
Aconitase C-terminal domain |
2.5e-43 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000438733 |
| B. mori |
BGIBMGA001726-TA |
| S. invicta |
SI2.2.0_01110 |
| T. castaneum |
TC010417 |
| D. melanogaster |
FBgn0024957 |
| P. vanderplanki |
Pv.02182 |
| H. melpomene |
HMEL010741-PA |
| H. sapiens |
ENSP00000309477 |
| A. mellifera |
GB16072-PA |
| C. quinquefasciatus |
CPIJ002118 |
| P. humanus |
PHUM449620-PA |
| A. gambiae |
AGAP007258 |
| H. sapiens |
ENSP00000452938 |
| P. vanderplanki |
Pv.02181 |
| D. plexippus |
DPOGS200504PA |
| D. plexippus |
DPOGS200503PA |
| H. sapiens |
ENSP00000258886 |
| B. mori |
BGIBMGA001725-TA |
| H. sapiens |
ENSP00000369255 |
| M. musculus |
ENSMUSG00000032293 |
| M. musculus |
ENSMUSG00000028405 |
| H. sapiens |
ENSP00000369253 |
| D. melanogaster |
FBgn0024958 |
| A. aegypti |
AAEL008216 |