MidgeBase gene description page [Pn.02259]
Outline
| Gene ID | Pn.02259 |
| Type | Protein coding gene |
| Scaffold | PnScaf1920 |
| Start | 4347 |
| End | 5934 |
| Direction | - |
Sequence
Transcript: 1254 (bp)
ATGACTTCGAAATTTCCGCGTTCGAAGCAAATAAGCGAAGAAAAATTGCTGAAACTGGCGAAAGAGTTTGACTCGCCGTTCTGGGCGTACGACGCTGAAATTATCAAGACGAGAGTCGAGCAGCTGCGGAGCTTCGACGTCATCCGCTATGCACAGAAGGCGAACTCGAACGTAAACATTCTGCGGCTGATGAAAAGTCTCGGCACCAAAATCGACGCCGTTTCGCCGGGCGAAATCGAGAGAGCTTTGCGTGCCGGTTTCGAAGCTGGAACGGCTGAAAATGAAATTGTGTTCACGGCCGACGTGATTGACGAGAAAGCGTGCGATCGTGTGATGGAGTTGAAAATTCCCATAAATTGCGGCTCGATTGACATGCTGAGAGTGGTTGGCAGGCGCGAGAATTCCGAAAATTATCCGGTGTTTATCAGAATAAATCCGGGCTTTGGACACGGCCACAGTCAGAAGACAAACACCGGCGGAGAGAACAGCAAGCATGGAATTTGGCACGAGGACTTGCCAGAGGCACTCGCAGTGATAAAAGAGTGCAAGCTGAAGCTCATCGGCTTCCACATGCACATCGGCTCGGGACTTTTCTCGAAGAACTTTGACCGCGTTTGTGACGCAATGGCGGAGCTGGTGTGTCGGTGCGACGTCGACATTGAAGCCATTTCAGCTGGTGGCGGCATTCCGATTGCCTACAGAGAGGAGGAAACGGCAGTGGACACAGAAAACTACTTCAGACTGTGGAATGAAGCGAAAAACAAAATTGAGAATCGCTTGGGACACGCGATCACGATGGAAATCGAACCCGGTCGCTTTCTTGTCGCAGAGTCCGGAATTTTGGTGACGAAAGTGCTGGCTGTGAAGCGAATGGGCAGCAAAAAGTATGCGCTTGTCAACTCGGGATTTCACGACCTGATGAGGCCTGCGATGTATGGCAGCTTTCACCACATCACCGTTCTGAGCGACACATCTACGCGAGAAAAGGAGGAGATCGTGATTGCGGGACACTTGTGCGAGTCTGGCGACATGTTCACTCAGGGCGATGGTGGAATTGTGCAGACCCGGTTGCTTCCAAAATTAGCTGTTGGCGATTACTTGGTCTTTCATGACGTCGGCGCCTATGGGGCCTCAATGTCGTCGAACTACAACTCGTGGCCGCTCATTCCGGAGGTCCTTTTCATCAACAACGAAGCGCAGGTGATAAGAAAGAGCCAGACAGTCGATGAGCTGATGCAATTGGAAGAAGTACAA
Protein: 418 (aa)
MTSKFPRSKQISEEKLLKLAKEFDSPFWAYDAEIIKTRVEQLRSFDVIRYAQKANSNVNILRLMKSLGTKIDAVSPGEIERALRAGFEAGTAENEIVFTADVIDEKACDRVMELKIPINCGSIDMLRVVGRRENSENYPVFIRINPGFGHGHSQKTNTGGENSKHGIWHEDLPEALAVIKECKLKLIGFHMHIGSGLFSKNFDRVCDAMAELVCRCDVDIEAISAGGGIPIAYREEETAVDTENYFRLWNEAKNKIENRLGHAITMEIEPGRFLVAESGILVTKVLAVKRMGSKKYALVNSGFHDLMRPAMYGSFHHITVLSDTSTREKEEIVIAGHLCESGDMFTQGDGGIVQTRLLPKLAVGDYLVFHDVGAYGASMSSNYNSWPLIPEVLFINNEAQVIRKSQTVDELMQLEEVQ
| Type | Start | End | Length |
| CDS |
4350 |
4477 |
128 |
| CDS |
4750 |
4934 |
185 |
| CDS |
4994 |
5934 |
941 |
| intron |
4478 |
4749 |
272 |
| intron |
4935 |
4993 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ZP_05973897 |
diaminopimelate decarboxylase [Providencia rustigianii DSM 4541] gb|EFB71096.1| diaminopimelate decarboxylase [Providencia rustigianii DSM 4541] |
1e-149 |
| InterPro |
IPR022643 |
Orn/DAP/Arg decarboxylase 2, C-terminal |
|
| InterPro |
IPR002986 |
Diaminopimelate decarboxylase, LysA |
|
| InterPro |
IPR022653 |
Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site |
|
| InterPro |
IPR009006 |
Alanine racemase/group IV decarboxylase, C-terminal |
|
| InterPro |
IPR000183 |
Ornithine/DAP/Arg decarboxylase |
|
| InterPro |
IPR022644 |
Orn/DAP/Arg decarboxylase 2, N-terminal |
|
| Gene Ontology(BP) |
GO:0009089 |
lysine biosynthetic process via diaminopimelate |
|
| Gene Ontology(MF) |
GO:0008836 |
diaminopimelate decarboxylase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00278.17 |
Pyridoxal-dependent decarboxylase, C-terminal sheet domain |
9.5e-23 |
| Pfam |
PF02784.11 |
Pyridoxal-dependent decarboxylase, pyridoxal binding domain |
4.1e-47 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.04512 |