MidgeBase gene description page [Pn.02229]
Outline
| Gene ID | Pn.02229 |
| Type | Protein coding gene |
| Scaffold | PnScaf1893 |
| Start | 56110 |
| End | 57511 |
| Direction | + |
Sequence
Transcript: 1338 (bp)
ATGGAGTTTCAGGCCGTAATACTTGCAGCTGGATTCGGGACGAGGTTTCGTGAGCTCGTCGCTTCGCGGCCCAAATGTTTGCTGCCCGTCGGACCGTTTCCTTTGATATTTTATCCTCTTAACTTTTGCTCGAGTTACGGAATCGAAGAGGTCATCATAATTGTACTGGAATCTCAGAAGAATGAAATAGCACAGCGTGTGACGAAGCTGCCACTCAAACTTAAGTACGAGTTCGTGTGTCTCAATCAAGAAGAGGACTTCGGAACTGCAGATGCCTTGCGGCTGGTTGCTGACAGAATCAAGACCGATGTCCTGCTCATTTCATGCGATACCATCACCAACGTCGACTTCTACCCCGTTCTCAATCAGTTCCGCAAGACAGATGCCTCTTGCGTTGCACTTTTTAATAGCGGCGTGAGCGATGAAAAGCAGGAGTTCATCGTGCCGGGACTGAAGGCCAAACATAAGGCAGAGAGAGACTTAGTTGGCATCGACAACTCAAGCGGCAGACTGCTCTTGCTCGCTTCGACGACAGACTTTCAAGACAACTTATCGTTGCCCGGGCACCTGCTTCGGTCGAATGGCGACGTCACGATCTACAGTAATCTTACGGATGCGCACATTTATTTGATGAAGCAGTGGGTAGTGAATTTCATAGCAAAGAGCGAAAAATTTTCGACCATCAAGGGCGAGCTTTTGCCGTTCATCATCAAGAAGCAAATGTCGCGGCCAATAGCCCTGAACAAAGGACACAACATATCGGAAGTCAATTTCGATTCCAACGACATCTTTGATCATATTGAACACACGGACCTGAGCAAACGAGTGCAAGAAACAAACCTCAACTGTTCGCCGCAGCAGAAGAAGCTGAAGAGCGTCGAGATGATCAAATGCTTTGCGCACGTGGCACCGCCCAACTCCTTCTGCGTAAGAGTCAACACAATTCTGAATTATTGCACAGCGAATAGAAAGATTCTGCCTTTCCTGGAAAATTTAAAACTTCCACTCATTTCGAAGAGCGCCAACATAAAATCAACTCAAATTAGCGACAGCTGCGTGGCCGAAAATGCAATAATTTCGGAAAAGACATCGATCAAGAACAGCATATTTGGCGTGGGCTGTCAAGTCAATCAGAGAACAAGAGTAAGCGACAGTGTCGTGATGAGCAATGCGATTATCGAGGAAGGGGTTGTCTTAGAGAACTCAATTATTTGCGACAAGGCGGTCGTCAAGACAGGCTCGGTTCTGAAGAATACAATGGTTGGTCACAATTTTGTTGTTGTTGAAAACACGGTCAAGGACCGAGCTCATTTGACTGGAGAAGGCTTCATGGAGATT
Protein: 446 (aa)
MEFQAVILAAGFGTRFRELVASRPKCLLPVGPFPLIFYPLNFCSSYGIEEVIIIVLESQKNEIAQRVTKLPLKLKYEFVCLNQEEDFGTADALRLVADRIKTDVLLISCDTITNVDFYPVLNQFRKTDASCVALFNSGVSDEKQEFIVPGLKAKHKAERDLVGIDNSSGRLLLLASTTDFQDNLSLPGHLLRSNGDVTIYSNLTDAHIYLMKQWVVNFIAKSEKFSTIKGELLPFIIKKQMSRPIALNKGHNISEVNFDSNDIFDHIEHTDLSKRVQETNLNCSPQQKKLKSVEMIKCFAHVAPPNSFCVRVNTILNYCTANRKILPFLENLKLPLISKSANIKSTQISDSCVAENAIISEKTSIKNSIFGVGCQVNQRTRVSDSVVMSNAIIEEGVVLENSIICDKAVVKTGSVLKNTMVGHNFVVVENTVKDRAHLTGEGFMEI
| Type | Start | End | Length |
| CDS |
56110 |
56257 |
148 |
| CDS |
56319 |
57508 |
1190 |
| intron |
56258 |
56318 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001661660 |
translation initiation factor eif-2b gamma subunit [Aedes aegypti] gb|EAT36481.1| translation initiation factor eif-2b gamma subunit [Aedes aegypti] |
1e-113 |
| InterPro |
IPR005835 |
Nucleotidyl transferase |
|
| Gene Ontology(BP) |
GO:0009058 |
biosynthetic process |
|
| Gene Ontology(MF) |
GO:0016779 |
nucleotidyltransferase activity |
|
| Pfam |
PF00132.19 |
Bacterial transferase hexapeptide (six repeats) |
0.047 |
| Pfam |
PF12804.2 |
MobA-like NTP transferase domain |
1e-10 |
| Pfam |
PF00483.18 |
Nucleotidyl transferase |
8.3e-16 |
| Pfam |
PF01128.14 |
Uncharacterized protein family UPF0007 |
0.021 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.02480 |
| P. humanus |
PHUM600920-PA |
| A. gambiae |
AGAP005210 |
| H. sapiens |
ENSP00000361257 |
| H. melpomene |
HMEL011323-PA |
| T. castaneum |
TC012553 |
| S. invicta |
SI2.2.0_09646 |
| M. musculus |
ENSMUSG00000028683 |
| B. mori |
BGIBMGA000300-TA |
| A. mellifera |
GB16418-PA |
| D. plexippus |
DPOGS200927PA |
| A. aegypti |
AAEL011442 |
| N. vitripennis |
NV17114-PA |
| D. melanogaster |
FBgn0034029 |
| H. sapiens |
ENSP00000353575 |