MidgeBase gene description page [Pn.02213]
Outline
| Gene ID | Pn.02213 |
| Type | Protein coding gene |
| Scaffold | PnScaf1893 |
| Start | 13953 |
| End | 16283 |
| Direction | - |
Sequence
Transcript: 2127 (bp)
ATGCAATCTTTAATTGCGAGTAGTCCGAATACACCGCTGCGCCGAAGATCAGCGCTAAATGTCTCGATCATATCTTCTTCACCGATCAATGCTTCGGAAGGTCGAGCTGAAAATATAAATGATGATGAGGCTGAGAGAAGATCATCGAGAAGAATTGAGCCGGTGGATATCGGAACGAATCTAAGCGAAGCGGCTGACTCGCTCAACAATTGCTTAAAACTTTTTGCAGAAAATAAAATAAGCAAGGATAATGCTTGGACACTCAATATCATCGATTCATTTTCAAAACTCATTAAGAAACATCATCACTCGCTCTCAAATTTTCAAGTGTGCGGCTCAACGCTCGAAGCATCGGCAAAGGTCTACAGTTTACGTGTTGACTCAGTTTATAGCGATGTCCTGCGAATGAGTACAGATCTATCGAGACAAACCGCAAAGGCACTTTCGAAGAGAGGCCGATTGAACGCCGAAAACGATGACGAAGATCAAAACGATTCAGGAGACGATGGCGAAGATAAGGAAAATAATGCAGAAGGTGGTCAAAAGCAAAGGAACGTGGTCAAGCGACGAAAGCAAATAAGCACAGTTACTAAAAATCCTGAAACACTCAACGGTCGTTTGGACAGTTATCCATTGGTCGATCCATTTTTCGCGAAGCTAAACTCAATGGTCGGTGACATCAACAGTTCAAAGCGTCTCATGCAAAATATCGTTCCGACAAGGAATTCGATCCTCAAGTTGCAACAAAATTTAAAAATATGGGATAGTCACGATGAAGATATAAACATTGAAGAGGAGTTTGACTACAAAAACGTAAATCCTGATCATATCTTTTCAATCAAGTCAGTTTCTGGAGGGGCAGCTGACACGGTTTTGCGTAGTGAGTTGAAGAGCTATCGCATATGTGATTTGCCTTTGGAGACTGCCGAGGAAGCGGACATGAGCATTCATTTGAATGCAAACAACGACTTGAATGAAACAATCACTCGCAATATGGACTTGCAATTTGACATGAATGCGCCTGTTGAGCCAATTGCAAACGAAAGATCGTTCGTAATGGACTTTGGCGAGCTCGATGAGAACGATTTTGAGGATTTGAACGATGATGAAATGGTGGCCCTTGAAAGATGCAAGGGATTGAAACGACAACCGATTCTCATCGAAGATATGCAGCCCGAAACATCAGTTCACCTCGAATACTCATATCGGCCTCTCGACATGATCGATCAATTCTGGGCTGGTCCATCGCATTGGAAATTTCGTCAAAGTCGCCGAACTCACGCTCTCAATTCGATGTCCGGGATGAGCCAGACAACAAGCACGTCGATCGCCACACAAGTTGTTGGCCAGAAGCCGAAAATTGTGCGCAAAAAGAAAATAGTGAAGAAAATTGAAGTTACGTTGGACGATTTTTACTATATTGACGAAAATAACATAATCGTTCCGATTAGCAAACGCATGAAGGCGAATCAACTTTCAGTACAAACGATGGCGAAACGCTGGGACAGCAAGAAGCTCAAGCTACCTGCTGATTATCGAGTCCCCAACGACATTTTCGACTCCTTCACTCACGCTTGCTCGATTCACATTGCAACAAATCCCGACACTACTTTCAATGGAAACGATGACGAAAATGCTCCTCTTTACGACTACGACAATGAAAACGATCGCAACTATTGTCCTCGAATCGCCGATACGCAATCAGACACTGAGACTGAAACTAATCCCGATGTCGGTCTAATGGATGACAACAACATAGAGTTCGATAGTGCCGACATGCCTCCGCCACCTGCGCCAATTGATGAAATTCCCGACATTTACGTCGGTGCACCTGAACGAATTGAAAAGATTAGCATCGCCTTTGCGAAACGCGCTAAAATAGTGGACATGCGACAGCTCAAGCATTGCAGTTGGAACCTTATTAGCAAGAAAAATCAGCAAGATCCATTGAATCACCCGTGCTTTAGCGAAACGCTCAACGATCTTCCGAAGGTTTTAAGCAAGACGATGGCCGAGAACATGAGTATGCCACTAGCATTCTACGCAATTTTGCACCTCTGCAATGACAAAGGACTTATTCTGAAACCTAACAATTCGTTGCGAGACTTTGAGATTAATTTTATAAAT
Protein: 709 (aa)
MQSLIASSPNTPLRRRSALNVSIISSSPINASEGRAENINDDEAERRSSRRIEPVDIGTNLSEAADSLNNCLKLFAENKISKDNAWTLNIIDSFSKLIKKHHHSLSNFQVCGSTLEASAKVYSLRVDSVYSDVLRMSTDLSRQTAKALSKRGRLNAENDDEDQNDSGDDGEDKENNAEGGQKQRNVVKRRKQISTVTKNPETLNGRLDSYPLVDPFFAKLNSMVGDINSSKRLMQNIVPTRNSILKLQQNLKIWDSHDEDINIEEEFDYKNVNPDHIFSIKSVSGGAADTVLRSELKSYRICDLPLETAEEADMSIHLNANNDLNETITRNMDLQFDMNAPVEPIANERSFVMDFGELDENDFEDLNDDEMVALERCKGLKRQPILIEDMQPETSVHLEYSYRPLDMIDQFWAGPSHWKFRQSRRTHALNSMSGMSQTTSTSIATQVVGQKPKIVRKKKIVKKIEVTLDDFYYIDENNIIVPISKRMKANQLSVQTMAKRWDSKKLKLPADYRVPNDIFDSFTHACSIHIATNPDTTFNGNDDENAPLYDYDNENDRNYCPRIADTQSDTETETNPDVGLMDDNNIEFDSADMPPPPAPIDEIPDIYVGAPERIEKISIAFAKRAKIVDMRQLKHCSWNLISKKNQQDPLNHPCFSETLNDLPKVLSKTMAENMSMPLAFYAILHLCNDKGLILKPNNSLRDFEINFIN
| Type | Start | End | Length |
| CDS |
13956 |
15652 |
1697 |
| CDS |
15720 |
15915 |
196 |
| CDS |
15989 |
16108 |
120 |
| CDS |
16170 |
16283 |
114 |
| intron |
15653 |
15719 |
67 |
| intron |
15916 |
15988 |
73 |
| intron |
16109 |
16169 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001651734 |
hypothetical protein AaeL_AAEL005962 [Aedes aegypti] gb|EAT42499.1| conserved hypothetical protein [Aedes aegypti] |
1e-124 |
| InterPro |
IPR022816 |
Condensin complex subunit 2/barren |
|
| Pfam |
PF05786.9 |
Condensin complex subunit 2 |
3.9e-109 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.04313 |
| A. aegypti |
AAEL005962 |
| D. plexippus |
DPOGS212977PA |
| C. quinquefasciatus |
CPIJ012273 |
| T. castaneum |
TC012137 |
| H. sapiens |
ENSP00000400774 |
| H. sapiens |
ENSP00000405237 |
| T. castaneum |
TC012237 |
| A. mellifera |
GB16624-PA |
| H. sapiens |
ENSP00000415162 |
| H. melpomene |
HMEL011316-PA |
| H. sapiens |
ENSP00000407308 |
| H. melpomene |
HMEL011792-PA |
| H. sapiens |
ENSP00000240423 |
| D. melanogaster |
FBgn0014127 |
| P. humanus |
PHUM172700-PA |
| M. musculus |
ENSMUSG00000034906 |
| T. castaneum |
TC003441 |
| A. gambiae |
AGAP011508 |
| B. mori |
BGIBMGA011861-TA |
| A. mellifera |
GB11159-PA |
| S. invicta |
SI2.2.0_08005 |
| N. vitripennis |
NV10879-PA |