MidgeBase gene description page [Pn.02187]
Outline
| Gene ID | Pn.02187 |
| Type | Protein coding gene |
| Scaffold | PnScaf1879 |
| Start | 79870 |
| End | 80382 |
| Direction | + |
Sequence
Transcript: 510 (bp)
ATGGAGAAATTTAACTTCCGTAAAACTTGGGATAGCAAGGAATATCTGGCGAAAGCTATCCAGCGAATACAAAACGAACAGAACGTTTCTCAATTGCAACCAAAGGAATTGACGACACATAAAGCTATTGAATGGGATAAAAAGCTTCGAAGAAAGAAAATTGCAATCGGACGAACTGTCATCAAAAGTTCGGATCCAAAAAAGAACTTTTATTGTGACATCTGCCTTGTTCAATCGAATGATTCATTGAGCTACATATCGCACCTGAACAGTAAAGAGCATCTTAAGAACATCGGCAAGGATTTATACGTAGAGCGCAGCTCACTGAAGCAGGTCCGCGAAAGATTCGAATTGGCTAAAGAGAAAATGACAATGGAGCTAACTCCGTACGAGAGGCATGTAAAGATGAATAAAACCAAAAATAAAAAGACTGAAGAAAAGCCGTCGATTGAAAAAGTAGACGAGGAAACTGCGAGAATGAACGACATTATGGGATTCTCAAGCTTCACT
Protein: 170 (aa)
MEKFNFRKTWDSKEYLAKAIQRIQNEQNVSQLQPKELTTHKAIEWDKKLRRKKIAIGRTVIKSSDPKKNFYCDICLVQSNDSLSYISHLNSKEHLKNIGKDLYVERSSLKQVRERFELAKEKMTMELTPYERHVKMNKTKNKKTEEKPSIEKVDEETARMNDIMGFSSFT
| Type | Start | End | Length |
| CDS |
79870 |
80379 |
510 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_001005119 |
zinc finger, matrin-type 2 [Xenopus (Silurana) tropicalis] gb|AAH77058.1| zinc finger, matrin type 2 [Xenopus (Silurana) tropicalis] |
7e-15 |
| InterPro |
IPR003604 |
Zinc finger, U1-type |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF12874.2 |
Zinc-finger of C2H2 type |
4.9e-06 |
| Pfam |
PF08648.7 |
Protein of unknown function (DUF1777) |
1.6 |
| Pfam |
PF04988.7 |
A-kinase anchoring protein 95 (AKAP95) |
0.88 |
| Pfam |
PF12171.3 |
Zinc-finger double-stranded RNA-binding |
0.00094 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.02644 |