MidgeBase gene description page [Pn.02172]
Outline
| Gene ID | Pn.02172 |
| Type | Protein coding gene |
| Scaffold | PnScaf1872 |
| Start | 2077 |
| End | 2555 |
| Direction | - |
Sequence
Transcript: 408 (bp)
ATGGGGAAAATCATGAAATCCGGAAAGGTGGTGCTCGTGCTGAGCGGTCGCTACGCAGGCCGCAAGGCCATCATCATGAAGACCTTCGACGAGGGCACGTCGGACAAGCTCTTCGGCCAGGCGCTCGTCGCTGGCATCGACCGCTACCCAAGACGCGTTACGAGGCGCATGAACAAGGCAAAGGTCCACAAGAACTGCAGAATTAAGCCCTTCATCAAGCTCGTGAACTACAACCATCTGATGCCGACACGTTACAGCGTTCCAGAGGTCACGCTCGACAGCAAATACAGCGTGAAGGACCTGAAAGACCCGATCAAGCGCAAGAAGGCCCGCTTCCAAGTGCGTATGCGCTTCGAGGATCGCTACAAGAGCGGCAAAAACAAGTGGTTCTTCACCAAGCTCCGATTC
Protein: 136 (aa)
MGKIMKSGKVVLVLSGRYAGRKAIIMKTFDEGTSDKLFGQALVAGIDRYPRRVTRRMNKAKVHKNCRIKPFIKLVNYNHLMPTRYSVPEVTLDSKYSVKDLKDPIKRKKARFQVRMRFEDRYKSGKNKWFFTKLRF
| Type | Start | End | Length |
| CDS |
2080 |
2268 |
189 |
| CDS |
2337 |
2555 |
219 |
| intron |
2269 |
2336 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACF72873 |
60S ribosomal protein L27e [Ochlerotatus taeniorhynchus] |
2e-62 |
| InterPro |
IPR018262 |
Ribosomal protein L27e, conserved site |
|
| InterPro |
IPR014722 |
Translation protein SH3-like, subgroup |
|
| InterPro |
IPR005824 |
KOW |
|
| InterPro |
IPR001141 |
Ribosomal protein L27e |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF01777.13 |
Ribosomal L27e protein family |
3.9e-33 |
| Pfam |
PF00467.24 |
KOW motif |
5.9e-06 |
| Pfam |
PF03078.10 |
ATHILA ORF-1 family |
0.044 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000073640 |
| A. gambiae |
AGAP011687 |
| H. sapiens |
ENSP00000467587 |
| H. sapiens |
ENSP00000253788 |
| A. aegypti |
AAEL011587 |
| M. musculus |
ENSMUSG00000063316 |
| B. mori |
BGIBMGA009863-TA |
| H. sapiens |
ENSP00000464813 |
| A. aegypti |
AAEL014838 |
| H. melpomene |
HMEL011476-PA |
| N. vitripennis |
NV15854-PA |
| D. plexippus |
DPOGS200872PA |
| A. mellifera |
GB15660-PA |
| D. melanogaster |
FBgn0039359 |
| T. castaneum |
TC001671 |
| C. quinquefasciatus |
CPIJ005878 |
| S. invicta |
SI2.2.0_00429 |
| P. vanderplanki |
Pv.00803 |
| P. humanus |
PHUM257880-PA |