MidgeBase gene description page [Pn.02088]
Outline
| Gene ID | Pn.02088 |
| Type | Protein coding gene |
| Scaffold | PnScaf1818 |
| Start | 2352 |
| End | 3282 |
| Direction | - |
Sequence
Transcript: 852 (bp)
ATGTCTTCCTCAAAACTGGCCGCTTTCGAGGGCCTCATGGCGCCGACCTTCACGCCCTTCACGCCAGACGGCGCCGTCAACCTCGACCTCATCGAGCCGTACGCGGCGCAGCTGAAGGCGAGCGGAATCGAGGCGATTCTCGTGAACGGCACGAGCGGCGAGGGACCGCTGATGAGCGTCGGCGAGCGCAAGGAAACGACCGAGCGCTGGCAGCTGGCGTGCCGCAAGCTTGGTCTGCTCATGATGGTCCAGATCGCGGGCTGCTCCTTCGCCGATGTCGTCGAACTGGCGCGGCACGCCGAGCACTTGCGCGTCGACGCCGTCCTGTGCCTGCCCGAGCTCTACTTCCGGCCGCGATCGGTCGACAGCCTCGTCGGCTACTTGCGCGACATCTCCGCGCACTGCCCGACCCGGCCGCTCTACTTCTACCACATCCCGATGTTCTCGGGCGTCGACCTCCCGATGGCCGCCACCATGGAGGCGGCGACGCGCGAAATCGCGACCTTCCGCGGCATCAAGTTCACGTCCGGGGACTTGGAGAAGGCGCTGCCCTGCTTGAGGCACGGCCAGGTGTTCTTGGGAAGCGACACGATCCTGTGCGGGGCGCTCGCTCTCGGTTTCACCTCGGCCATCATGACGTCGCTCAACATCTGCCCGCAGCTGTCGATGAGAATGGTCGAGCACATGAGAAGGGGCGAGGTGGAGGAGGCGCGCGAGCAGCAGCGGCTCCTCAACGAGTTCGTGGAGCAGACGCTGCAGAAGGGCGGCGGCGACTGGGTGCCGTCCATGAAGAAGGCCTTCAACGAGCGCTTCGAGCATCTGCACTTGGGAGGCGTCCGAAAGCCGTTAAAC
Protein: 284 (aa)
MSSSKLAAFEGLMAPTFTPFTPDGAVNLDLIEPYAAQLKASGIEAILVNGTSGEGPLMSVGERKETTERWQLACRKLGLLMMVQIAGCSFADVVELARHAEHLRVDAVLCLPELYFRPRSVDSLVGYLRDISAHCPTRPLYFYHIPMFSGVDLPMAATMEAATREIATFRGIKFTSGDLEKALPCLRHGQVFLGSDTILCGALALGFTSAIMTSLNICPQLSMRMVEHMRRGEVEEAREQQRLLNEFVEQTLQKGGGDWVPSMKKAFNERFEHLHLGGVRKPLN
| Type | Start | End | Length |
| CDS |
2355 |
2590 |
236 |
| CDS |
2667 |
3282 |
616 |
| intron |
2591 |
2666 |
76 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_308175 |
AGAP007700-PA [Anopheles gambiae str. PEST] gb|EAA03961.4| AGAP007700-PA [Anopheles gambiae str. PEST] |
2e-86 |
| InterPro |
IPR013785 |
Aldolase-type TIM barrel |
|
| InterPro |
IPR002220 |
Dihydrodipicolinate synthetase-like |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0016829 |
lyase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00701.17 |
Dihydrodipicolinate synthetase family |
5.3e-31 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV10391-PA |
| C. quinquefasciatus |
CPIJ000182 |
| H. melpomene |
HMEL007870-PA |
| A. mellifera |
GB17289-PA |
| S. invicta |
SI2.2.0_00550 |
| B. mori |
BGIBMGA004859-TA |
| B. mori |
BGIBMGA004810-TA |
| A. aegypti |
AAEL009298 |
| P. humanus |
PHUM449070-PA |
| M. musculus |
ENSMUSG00000042684 |
| N. vitripennis |
NV15425-PA |
| H. sapiens |
ENSP00000258317 |
| H. sapiens |
ENSP00000356524 |
| D. plexippus |
DPOGS202692PA |
| T. castaneum |
TC014551 |
| H. sapiens |
ENSP00000356525 |
| A. gambiae |
AGAP007700 |
| P. vanderplanki |
Pv.10709 |