MidgeBase gene description page [Pn.02063]
Outline
| Gene ID | Pn.02063 |
| Type | Protein coding gene |
| Scaffold | PnScaf1796 |
| Start | 13352 |
| End | 14283 |
| Direction | + |
Sequence
Transcript: 753 (bp)
ATGCTGCGCACAGTTTTAGTTGTCTTGGTGCTTGTTGCTTCAGCGCTATCTGGCTTAACTCCCGATGCTGGAATGAGGATTGGTCGTATCGCTGGAGGACAGTTAGCCGCACCCGGTCAATTTCCATATCAAGCATATTTAAGAACAACATTCAACTCTCACATTTGCGGAGGCTTCATCATAACTGCACGAACCGTCGGCAGTTCTGGTCACTGTGCGATCAGAAGAGCACCATCGAATACAGTCGTGGTCGTTGGTACAAACAGCCGCTTGGTTGGTGGAACGTCGTATGAAGTGCAGTCGATTGCAATTCATCCTCAATACACTTCCAGGCCCCTTACCTATGACATTTCCGTCCTAATTACATCAACGCCCATTGTCTTCTCAACGCTTGTCACGAGCATTCCTCTTAGTCCCGACTTCTTTAGTTCGGGCACTGCCGTCGTCGCTGGCTGGGGTCAACTTTCGCGTTGGAGTAGTAAAGCGCTCGAGTTGCGGTACTTGACCCAGAATGTCATTACAAATGATGAATGTGCCATGCACGTAGGACCATCGCAGATCGATGAGAGCATATTGTGTGCGAAATCGTTGATTAATCAAGGATTATGCATTGGCGACGCTGGTGGCCCGTTGGTGGCCAACGGTTCTGTAATTGGTGTGGCTTCGTGGGGCATTGCTTGTGCTAGGGGTAAACCTGACATGTATGCCCGAATTTCGGTCGTCAACAGCTGGCTTTTGACGCAAATCGTCAAC
Protein: 251 (aa)
MLRTVLVVLVLVASALSGLTPDAGMRIGRIAGGQLAAPGQFPYQAYLRTTFNSHICGGFIITARTVGSSGHCAIRRAPSNTVVVVGTNSRLVGGTSYEVQSIAIHPQYTSRPLTYDISVLITSTPIVFSTLVTSIPLSPDFFSSGTAVVAGWGQLSRWSSKALELRYLTQNVITNDECAMHVGPSQIDESILCAKSLINQGLCIGDAGGPLVANGSVIGVASWGIACARGKPDMYARISVVNSWLLTQIVN
| Type | Start | End | Length |
| CDS |
13352 |
13559 |
208 |
| CDS |
13616 |
14019 |
404 |
| CDS |
14079 |
14126 |
48 |
| CDS |
14188 |
14280 |
93 |
| intron |
13560 |
13615 |
56 |
| intron |
14020 |
14078 |
59 |
| intron |
14127 |
14187 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACF19792 |
serine-type enodpeptidase SP [Chironomus riparius] |
3e-49 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00089.21 |
Trypsin |
9.4e-39 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes