MidgeBase gene description page [Pn.02043]
Outline
| Gene ID | Pn.02043 |
| Type | Protein coding gene |
| Scaffold | PnScaf1773 |
| Start | 2831 |
| End | 5999 |
| Direction | - |
Sequence
Transcript: 1647 (bp)
ATGGCTTCAGTGGCGGCATGGCTGCCGCTAGCACGTGCAACAGCCATCGGCTGGATTCCGATCGCGAGCAATCCACTACCACCGCCGCCCCTAGTCAAGGATCGTCGACGGGCGGAGGACGAGAAGCTCATAATCAACATTTCGGGCCATCGTTTTGAGACGTGGCGCAACACACTCGAGAAGTACCCCGACACACTGCTCGGCTCCAACGAGCGCGAGTTCTTCTTCGACGAGGAGAGCAAAGAGTACTTCTTCGATCGCGACCCCGACATCTTCCGACACATTCTCAATTATTACCGAACGGGCAAATTGCATTATCCGCGTCACGAGTGTCTAACGAGTTATGACGAGGAGCTGACATTCTTCGGGGTTCTGCCCGACGTAATTGGCGACTGCTGCTACGAGGAATATAGGGACCGAAAACGTGAAAACGCCGAGCGATTACTGGACGATAATCTGTCGGAGAAGTCGGACACAAATCTGCCGCCGCTGACGAACATAAGACAGCGAATGTGGCGGGCGTTCGAGAATCCACACACATCGACGGCGGCTTTGGTGTTCTACTATGTCACTGGCTTCTTTATTGCCGTCTCAGTAATGGCTAATGTCGTCGAAACTGTACCATGCGGACTGCGGCCTGGCAGAGCGGGCACATTATCATGCGGCGAACGTTACAAAATTGTATTTTTCTGTTTAGATACAGCCTGTGTGATGATCTTTACTGCTGAATATTTACTTCGACTATTTGCCGCGCCATCGCGATGGAAATTTATGCGTAGCGTCATGTCGATCATTGATGTTGTGGCAATCATGCCGTATTACATCGGCTTATTTATGCAAGATAACGATGATGTATCGGGCGCTTTTGTTACACTCCGAGTATTCCGTGTATTTCGTATTTTTAAATTCTCAAGACATTCGCAAGGATTACGTATTCTTGGCTACACGCTCAAATCGTGTGCTTCCGAGCTTGGCTTTCTCGTGTTCTCACTCGCCATGGCCATCATCATTTTTGCAACTGTGATGTTTTATGCTGAAAAGAATGTTGATGGCACCAACTTTACGTCGATTCCGGCTGCTTTCTGGTACACCATTGTGACGATGACGACTCTCGGATACGGTGACATGGTGCCGGAGACGATTGCTGGCAAAGTGGTTGGCGGTGTTTGCTCGCTGAGCGGTGTTTTGGTCATTGCTCTTCCCGTTCCCGTAATTGTGTCAAACTTCAGTCGAATTTATCATCAGAGTCAGCGTGCTGACAAGCGAAAAGCGCAGAGGAAAGCACGATTGGCACGCATTAAAATGGCGAAGGCATCGTCGGGGGCAGCGTTCATCAACAAGAAGCGCGCAGCCGAGGCACGTCTCGCGGCTCAAGAGAGCGGCATCGATATGGATGAGAGCTATAATGACGAGGACATCTTCGAGTTACAACATCATCATCTGTTGCGATGTCTCGAGAAGACAACCGACCGAGAGTTTCTCGATCTAGATCACGGCTTCAATGGCATCACACAGGCGAAGCGACCGGGCTCACCGTCGCCCATGGCAAGTCCCTCGCACTCGACCAACACCACTGCTGGACTGCTGCAGTCGTGCTGCGGACGATGTTGCTCGCAACGCTATCAGAGTTACACATCGGCGAATCAA
Protein: 549 (aa)
MASVAAWLPLARATAIGWIPIASNPLPPPPLVKDRRRAEDEKLIINISGHRFETWRNTLEKYPDTLLGSNEREFFFDEESKEYFFDRDPDIFRHILNYYRTGKLHYPRHECLTSYDEELTFFGVLPDVIGDCCYEEYRDRKRENAERLLDDNLSEKSDTNLPPLTNIRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPCGLRPGRAGTLSCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPSRWKFMRSVMSIIDVVAIMPYYIGLFMQDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKVVGGVCSLSGVLVIALPVPVIVSNFSRIYHQSQRADKRKAQRKARLARIKMAKASSGAAFINKKRAAEARLAAQESGIDMDESYNDEDIFELQHHHLLRCLEKTTDREFLDLDHGFNGITQAKRPGSPSPMASPSHSTNTTAGLLQSCCGRCCSQRYQSYTSANQ
| Type | Start | End | Length |
| CDS |
2834 |
2854 |
21 |
| CDS |
3206 |
3364 |
159 |
| CDS |
3556 |
3744 |
189 |
| CDS |
3871 |
4033 |
163 |
| CDS |
4123 |
4396 |
274 |
| CDS |
4467 |
4503 |
37 |
| CDS |
5019 |
5203 |
185 |
| CDS |
5283 |
5532 |
250 |
| CDS |
5631 |
5999 |
369 |
| intron |
2855 |
3205 |
351 |
| intron |
3365 |
3555 |
191 |
| intron |
3745 |
3870 |
126 |
| intron |
4034 |
4122 |
89 |
| intron |
4397 |
4466 |
70 |
| intron |
4504 |
5018 |
515 |
| intron |
5204 |
5282 |
79 |
| intron |
5533 |
5630 |
98 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001658131 |
voltage-gated potassium channel [Aedes aegypti] gb|EAT41230.1| voltage-gated potassium channel [Aedes aegypti] |
0.0 |
| InterPro |
IPR011333 |
BTB/POZ fold |
|
| InterPro |
IPR003975 |
Potassium channel, voltage dependent, Kv4 |
|
| InterPro |
IPR003968 |
Potassium channel, voltage dependent, Kv |
|
| InterPro |
IPR005821 |
Ion transport domain |
|
| InterPro |
IPR003131 |
Potassium channel tetramerisation-type BTB domain |
|
| InterPro |
IPR021645 |
Shal-type voltage-gated potassium channels |
|
| InterPro |
IPR003091 |
Voltage-dependent potassium channel |
|
| InterPro |
IPR024587 |
Potassium channel, voltage dependent, Kv4, C-terminal |
|
| InterPro |
IPR000210 |
BTB/POZ-like |
|
| Gene Ontology(BP) |
GO:0055085 |
transmembrane transport |
|
| Gene Ontology(BP) |
GO:0006813 |
potassium ion transport |
|
| Gene Ontology(BP) |
GO:0051260 |
protein homooligomerization |
|
| Gene Ontology(BP) |
GO:0006811 |
ion transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0008076 |
voltage-gated potassium channel complex |
|
| Gene Ontology(MF) |
GO:0005249 |
voltage-gated potassium channel activity |
|
| Gene Ontology(MF) |
GO:0005216 |
ion channel activity |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF11879.3 |
Domain of unknown function (DUF3399) |
2.3e-20 |
| Pfam |
PF07885.11 |
Ion channel |
7.1e-13 |
| Pfam |
PF11601.3 |
Shal-type voltage-gated potassium channels |
4.4e-12 |
| Pfam |
PF02214.17 |
K+ channel tetramerisation domain |
8.9e-28 |
| Pfam |
PF00520.26 |
Ion transport protein |
4.4e-28 |
| Pfam |
PF08016.7 |
Polycystin cation channel |
0.02 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000040896 |
| P. humanus |
PHUM065350-PA |
| M. musculus |
ENSMUSG00000060882 |
| B. mori |
BGIBMGA013355-TA |
| A. gambiae |
AGAP007046 |
| H. sapiens |
ENSP00000358711 |
| H. sapiens |
ENSP00000306923 |
| T. castaneum |
TC004130 |
| S. invicta |
SI2.2.0_13248 |
| P. vanderplanki |
Pv.11492 |
| H. sapiens |
ENSP00000319591 |
| D. melanogaster |
FBgn0005564 |
| H. melpomene |
HMEL003747-PA |
| N. vitripennis |
NV13998-PA |
| C. quinquefasciatus |
CPIJ018527 |
| H. sapiens |
ENSP00000333496 |
| H. sapiens |
ENSP00000218176 |
| M. musculus |
ENSMUSG00000009731 |
| H. sapiens |
ENSP00000365660 |
| A. mellifera |
GB17390-PA |
| D. plexippus |
DPOGS214469PA |
| A. aegypti |
AAEL007104 |
| P. vanderplanki |
Pv.07438 |