MidgeBase gene description page [Pn.02040]
Outline
| Gene ID | Pn.02040 |
| Type | Protein coding gene |
| Scaffold | PnScaf1771 |
| Start | 36900 |
| End | 38765 |
| Direction | - |
Sequence
Transcript: 1674 (bp)
ATGGCTGCTGAAGCTATAGAAAAACTGTCAATAGGCGAAATATACACATCTGAGAAACGTGGCAATGACGAGACGGGCGATGGCACCGAAGGGAAGCCCTTCAAGACGATCATGCAGGCGATGAAGCACCACGGCAAGGATCCGTTTCCGACAATTTACGTCGACGCGAAAGACGAAAAGGCTGACAGTCCGTACGAGCCGGCTGCAAAATCTCAACTGAAAAAAATCCAGAAGCTGTGGGCGCAGGAAATGCAAAAGCTGGCGAAGAGCAAGAAACGAGAGGAGGAAGACGCCGCGAAGAGAGAACAAAACTTAGAGGAGGCAAAGAAGATCAAAATCGCAGAGGATCCCTCGTGGACGCCGGCCAAGTTAATTAGAATCAACCAAGGCAAAGACAACCGCGGCATTCGAGTGAAAGTCTACGGTTGGGTGCACCGACTGAGACGTCAAGGCAAAGGCCTAATGTTCGTCACTCTTCGCGACGGCTACGGATTTCTGCAGTGCGTGCTTTCGGATCTCCTCTGTCAGACGTACGAAGGACTGCTGCTCTCGACCGAATCTTCAGTCCTCCTCTACGGCACACTCAAGGAGGTTCCCGAGGGAAAGACTGCTCCCGACCAGCATGAGCTGCACGTCGACTACTGGGAGCTCATCGGCCTTGCACCAGCCGGTGGTGCCGACAACCTGCTCAACGAGGAAGCCCATCCAGACGTCCAACTTGACAACCGACACATGATGATTCGCGGCGAGAACACATCGAAAATCCTCAAAATGCGAAGCGTCGTCATGCAGGCCTTTCGCGCGCACTTCTTCGATCGCGGCTACACGGAGGTCACGCCGCCGACTCTCGTGCAAACACAGGTCGAGGGCGGCTCGACGCTGTTCAAGTTCGACTACTTCGGCGAGGAGGCGTATCTCACGCAGAGCTCGCAGCTATATCTGGAAACGTGCATGCCGTCGCTTGGCGACGTCTTCTGCATCGCGCAGAGCTACCGAGCCGAGCAGTCGCGCACGAGACGCCACTTGGCCGAGTACAGTCACATCGAAGCTGAGCGCGCTTTTATCTCGTTCAATGACTTACTCGACTGCCTCGAGGACCTGATCTGCGATGTCGTCGATCGCGTACTAAAGTCGCCATTCGCTCAACTGGTCAAGGACTTGAACCCCGACTTCAAGCCGCCGAAAAGACCGTTCCGTCGCATGGACTATGCCGAAGCGATCGAGTGGCTGCGGGCCAACAATGTGACCAAGGACGACGGCACGTTCTACGAGTTTGGCGAGGACATTCCAGAAGCGCCCGAGCGAAAAATGACCGACACAATCAATGAGCCGATAATGCTGTGCCGCTTCCCGGCCGGCATCAAAGCCTTCTACATGTCGCGCTGTCCCGAGAACGCAGAGTTGACTGAAAGCGTGGACGTTTTGTTGCCGGGCGTTGGGGAAATTGTCGGCGGATCTATGCGTGAGCATGACAATGAAAAATTACTGGCTGCATATCAACGCGAAGGCATCGACCCAGCTCCCTACTACTGGTACACGGATCAGCGAGTTTTTGGCACAACCACTCATGGCGGATACGGTCTAGGGTTGGAGCGCTTCCTTTGCTGGCTCTTGAACCGCTATCACATTAGAGAAGTCTGTTTGTATCCTCGTTTCCTTCAGCGCTGCAAACCT
Protein: 558 (aa)
MAAEAIEKLSIGEIYTSEKRGNDETGDGTEGKPFKTIMQAMKHHGKDPFPTIYVDAKDEKADSPYEPAAKSQLKKIQKLWAQEMQKLAKSKKREEEDAAKREQNLEEAKKIKIAEDPSWTPAKLIRINQGKDNRGIRVKVYGWVHRLRRQGKGLMFVTLRDGYGFLQCVLSDLLCQTYEGLLLSTESSVLLYGTLKEVPEGKTAPDQHELHVDYWELIGLAPAGGADNLLNEEAHPDVQLDNRHMMIRGENTSKILKMRSVVMQAFRAHFFDRGYTEVTPPTLVQTQVEGGSTLFKFDYFGEEAYLTQSSQLYLETCMPSLGDVFCIAQSYRAEQSRTRRHLAEYSHIEAERAFISFNDLLDCLEDLICDVVDRVLKSPFAQLVKDLNPDFKPPKRPFRRMDYAEAIEWLRANNVTKDDGTFYEFGEDIPEAPERKMTDTINEPIMLCRFPAGIKAFYMSRCPENAELTESVDVLLPGVGEIVGGSMREHDNEKLLAAYQREGIDPAPYYWYTDQRVFGTTTHGGYGLGLERFLCWLLNRYHIREVCLYPRFLQRCKP
| Type | Start | End | Length |
| CDS |
36903 |
38542 |
1640 |
| CDS |
38732 |
38765 |
34 |
| intron |
38543 |
38731 |
189 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001961904 |
GF15206 [Drosophila ananassae] gb|EDV31125.1| GF15206 [Drosophila ananassae] |
0.0 |
| InterPro |
IPR012340 |
Nucleic acid-binding, OB-fold |
|
| InterPro |
IPR004365 |
Nucleic acid binding, OB-fold, tRNA/helicase-type |
|
| InterPro |
IPR004522 |
Asparaginyl-tRNA synthetase, class IIb |
|
| InterPro |
IPR006195 |
Aminoacyl-tRNA synthetase, class II |
|
| InterPro |
IPR002312 |
Aspartyl/Asparaginyl-tRNA synthetase, class IIb |
|
| InterPro |
IPR004364 |
Aminoacyl-tRNA synthetase, class II (D/K/N) |
|
| InterPro |
IPR016027 |
Nucleic acid-binding, OB-fold-like |
|
| InterPro |
IPR018150 |
Aminoacyl-tRNA synthetase, class II (D/K/N)-like |
|
| Gene Ontology(BP) |
GO:0006421 |
asparaginyl-tRNA aminoacylation |
|
| Gene Ontology(BP) |
GO:0006418 |
tRNA aminoacylation for protein translation |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0004816 |
asparagine-tRNA ligase activity |
|
| Gene Ontology(MF) |
GO:0004812 |
aminoacyl-tRNA ligase activity |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF01409.15 |
tRNA synthetases class II core domain (F) |
0.099 |
| Pfam |
PF01336.20 |
OB-fold nucleic acid binding domain |
2.3e-12 |
| Pfam |
PF00152.15 |
tRNA synthetases class II (D, K and N) |
1.5e-75 |
| Pfam |
PF13446.1 |
A repeated domain in UCH-protein |
0.12 |
| Pfam |
PF07602.6 |
Protein of unknown function (DUF1565) |
0.037 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA013133-TA |
| A. mellifera |
GB18152-PA |
| H. sapiens |
ENSP00000407919 |
| A. gambiae |
AGAP002969 |
| A. aegypti |
AAEL006577 |
| H. melpomene |
HMEL015542-PA |
| P. humanus |
PHUM114810-PA |
| T. castaneum |
TC011193 |
| D. melanogaster |
FBgn0086443 |
| D. plexippus |
DPOGS206870PA |
| P. vanderplanki |
Pv.06483 |
| C. quinquefasciatus |
CPIJ015476 |
| S. invicta |
SI2.2.0_06357 |
| M. musculus |
ENSMUSG00000024587 |
| H. sapiens |
ENSP00000256854 |
| N. vitripennis |
NV13466-PA |