MidgeBase gene description page [Pn.02029]
Outline
| Gene ID | Pn.02029 |
| Type | Protein coding gene |
| Scaffold | PnScaf1768 |
| Start | 16435 |
| End | 17446 |
| Direction | + |
Sequence
Transcript: 897 (bp)
ATGCTGAGAAAATTAAGTTTTAATCAAAATTTGGTGGTAAATCCACAATATTTATTTCTGCGATTTGCATCGACAAAGGCGGAAATTAGTGAATATGCGGCTGAAACATTGGAAAGAAAACAGCGTCCAAAGAAGTTCAAGAAGGTGCCCAGCGATTTCAGATTCAAATATCCCGAATTTCTACCAAGTCCGGTTCCAAGATACAGGAATCCAGTGATTGAGAAACTTACGCGGCAGGACATGCTCCAAAGAAGAGCACAAGTTCATATACCCGAGTTCTATGTTGGATCAATAATGAAAGTAACCATATCCGATCCTCACTCGCCGGGAAAAACGAACAGCTTTGTCGGCATTTGCACAGTTCGCGAGTACACTGGTCTAGCAACGCAAATTACTCTGAGAAACGTCATCGATCATCAGGGCGTCGATGTAACTTACGACCTCTACGATCCTCTTATTCAAAAAATTGAAGTTCTAAAACTAGAGAAGAGATTGGACGATAAAATGCTCTATCTGAGAGATGCCCTTCCTGAGTACAGCACAATTGATTTGAATATGGAGCCAGAAATTTTAGCCGAAGGAGCTCCAGTTCCCGTCAACGATACCATTGTCAAAATGAAGCCCCTTCCGTGGATGCAAAAGTGGGAGAGGAAGGAGCTGAAAGGAGTTGAAGAACTTGATCAGTATCTCAATCTGTGGAGAAAGCAACAGCGAGAGAAGCAAGCAACACCGTGGGAAAAGTATGACCTCATGAAAGAATATCGCAGGACGATCCCCGAAGAGGAGCAAAATAAAATTTTCTCTGAAATATTTACACGCGTAAACAAGATTAACGAAGAACACAAGTTGAAGGCTAAAGCGGCTCGAAGAACGATCAACAAGCCCCAAAAACTCGCA
Protein: 299 (aa)
MLRKLSFNQNLVVNPQYLFLRFASTKAEISEYAAETLERKQRPKKFKKVPSDFRFKYPEFLPSPVPRYRNPVIEKLTRQDMLQRRAQVHIPEFYVGSIMKVTISDPHSPGKTNSFVGICTVREYTGLATQITLRNVIDHQGVDVTYDLYDPLIQKIEVLKLEKRLDDKMLYLRDALPEYSTIDLNMEPEILAEGAPVPVNDTIVKMKPLPWMQKWERKELKGVEELDQYLNLWRKQQREKQATPWEKYDLMKEYRRTIPEEEQNKIFSEIFTRVNKINEEHKLKAKAARRTINKPQKLA
| Type | Start | End | Length |
| CDS |
16435 |
16483 |
49 |
| CDS |
16596 |
17443 |
848 |
| intron |
16484 |
16595 |
112 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001954245 |
GF18180 [Drosophila ananassae] gb|EDV42806.1| GF18180 [Drosophila ananassae] |
8e-84 |
| InterPro |
IPR008991 |
Translation protein SH3-like |
|
| InterPro |
IPR001857 |
Ribosomal protein L19 |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF01245.15 |
Ribosomal protein L19 |
8.1e-16 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA010173-TA |
| D. melanogaster |
FBgn0037608 |
| A. aegypti |
AAEL004306 |
| P. humanus |
PHUM488460-PA |
| M. musculus |
ENSMUSG00000030045 |
| P. vanderplanki |
Pv.08602 |
| H. melpomene |
HMEL013601-PA |
| S. invicta |
SI2.2.0_15401 |
| C. quinquefasciatus |
CPIJ013130 |
| T. castaneum |
TC007586 |
| A. gambiae |
AGAP001139 |
| H. sapiens |
ENSP00000387284 |
| N. vitripennis |
NV16867-PA |
| C. quinquefasciatus |
CPIJ019257 |
| D. plexippus |
DPOGS212020PA |
| A. mellifera |
GB12137-PA |
| H. sapiens |
ENSP00000377486 |