MidgeBase gene description page [Pn.02028]
Outline
| Gene ID | Pn.02028 |
| Type | Protein coding gene |
| Scaffold | PnScaf1768 |
| Start | 14326 |
| End | 16248 |
| Direction | - |
Sequence
Transcript: 1128 (bp)
ATGGCTCAATCTTCGGCATCATCGTCGGTGCTCAAATTATATCAACTCGTTATTGAGGATGTTGTGGCAAATGTGCGAGATGCCTTTCTCGACGAAGGAGTCGACGAGCAAGTGTTACAGGAAATGAAACAGATTTGGACAAATCGCTTGATGGTGAGTAAGGCCGTTGAAGTCACGCCGGAACCACAGGCGCCCACAGCTAACCAGCCATCGATATTAGCGAATAATCCAAAAGCAAATGGGACGAAAACGAAAAAGGCAGCTGAAGCGAAAAATTCTGCGGCATCAGTTAATGGAAATGTAAAAAGTAATGTTCCTCCTCCGTTGGCCGCAACAACGCCAAAAACTATCCCCAACACTCCTGTAACTAAGAATCAAACAACAACTGTGGTGAAAACAGAACCCGGTCACTCGACAACCTCCTCTTTATCTGCATCACAGCCCACTTCGTCCACTGCGCCCACATCGTCGACCTCTTCGGCAGCCGCATCCTCTTCTCAAAACGGACCGCCTGCACTGCAACAGCAAACAGCACTAGATCCAAATAAGCTAATACCAATTCAAATCACTCTTCCTCCGCAACCTCCGAACGAGACCGAGAATCGCATACTGACGATTAAAGTGCCCGCACGCGCCATTCAGGAAAATCAGTTGCAACAGGTCATCACAGGGGAAATCATCACATCGATTATGCCTCTTCAGCCGAGTGTCGCTTCGGCAGTTCTGCAGCAGCACGTGACATCGGTTCTAAACACAATGTATGCTAAAAATCCGATCAAGTTGAGCAGACAAGTTGACGGAACGGCTGGTGATACATCAGACGAGGATGGAAGTGACATTAGCGATGACCACTACGAGGATATAGACGATGATGATTTGAATAGAGACGAAGATGGCTCAGATATAAACGACACTGAAGGTGGAGCCGAAGAAGAACCGTTAAATTCAGAAGACGACGTGACGGACGAGGACGCTGCAGATTTATTTGAAACGGACAATGTTGTTGTGTGTCAGTATGATAAGATTAATCGCTCACGTAACAAATGGAAGTTTTATTTAAAGGATGGCATCATGAATCTTAATGGAAAGGATTATGTCTTTTCAAAATCCACTGGCGATGCCGAATGG
Protein: 376 (aa)
MAQSSASSSVLKLYQLVIEDVVANVRDAFLDEGVDEQVLQEMKQIWTNRLMVSKAVEVTPEPQAPTANQPSILANNPKANGTKTKKAAEAKNSAASVNGNVKSNVPPPLAATTPKTIPNTPVTKNQTTTVVKTEPGHSTTSSLSASQPTSSTAPTSSTSSAAASSSQNGPPALQQQTALDPNKLIPIQITLPPQPPNETENRILTIKVPARAIQENQLQQVITGEIITSIMPLQPSVASAVLQQHVTSVLNTMYAKNPIKLSRQVDGTAGDTSDEDGSDISDDHYEDIDDDDLNRDEDGSDINDTEGGAEEEPLNSEDDVTDEDAADLFETDNVVVCQYDKINRSRNKWKFYLKDGIMNLNGKDYVFSKSTGDAEW
| Type | Start | End | Length |
| CDS |
14329 |
14433 |
105 |
| CDS |
14510 |
14681 |
172 |
| CDS |
14744 |
14825 |
82 |
| CDS |
14898 |
15432 |
535 |
| CDS |
15714 |
15917 |
204 |
| CDS |
16219 |
16248 |
30 |
| intron |
14434 |
14509 |
76 |
| intron |
14682 |
14743 |
62 |
| intron |
14826 |
14897 |
72 |
| intron |
15433 |
15713 |
281 |
| intron |
15918 |
16218 |
301 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001652503 |
tfiia large subunit [Aedes aegypti] gb|EAT41358.1| tfiia large subunit [Aedes aegypti] |
2e-84 |
| InterPro |
IPR004855 |
Transcription factor IIA, alpha/beta subunit |
|
| InterPro |
IPR009088 |
Transcription factor IIA, beta-barrel |
|
| InterPro |
IPR013028 |
Transcription factor IIA, alpha subunit, N-terminal |
|
| InterPro |
IPR009083 |
Transcription factor IIA, helical |
|
| Gene Ontology(BP) |
GO:0006367 |
transcription initiation from RNA polymerase II promoter |
|
| Gene Ontology(CC) |
GO:0005672 |
transcription factor TFIIA complex |
|
| Pfam |
PF03153.8 |
Transcription factor IIA, alpha/beta subunit |
2.4e-83 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL006331-PA |
| D. plexippus |
DPOGS204845PA |
| N. vitripennis |
NV18573-PA |
| A. aegypti |
AAEL007022 |
| A. mellifera |
GB14953-PA |
| P. vanderplanki |
Pv.08603 |
| B. mori |
BGIBMGA011737-TA |
| T. castaneum |
TC011708 |
| A. gambiae |
AGAP002958 |
| P. humanus |
PHUM435190-PA |
| D. melanogaster |
FBgn0011289 |
| C. quinquefasciatus |
CPIJ002554 |