MidgeBase gene description page [Pn.02007]
Outline
Gene ID | Pn.02007 |
Type | Protein coding gene |
Scaffold | PnScaf1755 |
Start | 52038 |
End | 53038 |
Direction | + |
Sequence
Transcript: 879 (bp)
ATGAATATTTCGCGATTACTTAAAACTACTACCTCAAAAGTCTTATCGTCGCCTCAGTGGTTATTGAGAAGCAATGTAAAGTTGCAATCAACAAGTGCTGCCGCACAAAAGCTAGTCGATGTCACCGTCGATGAGAAGTCGGGCATTTCAGTGGTTGCTCTGAATCGCAAGCCCGTCAACAGTCTGTCATTGGAGTTATTCAAAGAGTTTTGCGGCGTAATGGACGACTTGGAGCGAGACCGCGTCCGTGGGATGATTTTAAAGAGTTCATGTGATAATGTTTTCTCGAGTGGACTTGACATTACCGAACTCTACCCGCATCCGTCCGAGGATCGCTTCCACGCATTCTGGCTTTGGTTCCAAGAGACTTGGATTAAGCTCTATGGCTCATCATTCCCCACCGTTGCATTTATTAATGGCCACGCTCCAGCAGGCGGATGCGTCTTGGCGATTTCATGTGAATACCGAGTTATGCTGCCATACTACAAAATCGGACTCAACGAGGCTCCAGTCGGCATCGTTGCACCCGATTGGGTCATGTCCAGCTTGAAAAACGTACTGCCGAATCGGAAGGCGGAGCAGCTGTTGACCTCTGGGAAGTTGATTGATTCGCAAGAGGCGTTCGATATCGGACTCGTGGACAAGATCGTGAACAACGAGGAGGAAGCAATCGCACGAGCGGAAGAATTTATCGCGACATTCGATCATGTACCGAAGTTGGCAAGAGCACTGACGAAGCAAGGCTTCCGCAAAAATGATCTTACGCCGATGATTAAGAACCGATCGAAGGATGCCAAGCTCTTCCTCAATCATATTTTGCGCCCAGAAACTCAGAAGATCATCGGATCATACTTTAAAAGTCTTAAAGACCGCAAAAAG
Protein: 293 (aa)
MNISRLLKTTTSKVLSSPQWLLRSNVKLQSTSAAAQKLVDVTVDEKSGISVVALNRKPVNSLSLELFKEFCGVMDDLERDRVRGMILKSSCDNVFSSGLDITELYPHPSEDRFHAFWLWFQETWIKLYGSSFPTVAFINGHAPAGGCVLAISCEYRVMLPYYKIGLNEAPVGIVAPDWVMSSLKNVLPNRKAEQLLTSGKLIDSQEAFDIGLVDKIVNNEEEAIARAEEFIATFDHVPKLARALTKQGFRKNDLTPMIKNRSKDAKLFLNHILRPETQKIIGSYFKSLKDRKK
Type | Start | End | Length |
CDS |
52038 |
52304 |
267 |
CDS |
52363 |
52513 |
151 |
CDS |
52575 |
53035 |
461 |
intron |
52305 |
52362 |
58 |
intron |
52514 |
52574 |
61 |
Auto annotation result
Program/Analysis | Accession | Description | Score/Expectation |
BLASTP/NCBI-nr |
XP_002088992 |
GE18878 [Drosophila yakuba] gb|EDW88704.1| GE18878 [Drosophila yakuba] |
3e-72 |
InterPro |
IPR001753 |
Crotonase, core |
|
Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
Pfam |
PF00378.15 |
Enoyl-CoA hydratase/isomerase family |
4.8e-51 |
Pfam |
PF01343.13 |
Peptidase family S49 |
0.0071 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
Species |
Gene ID |
P. vanderplanki |
Pv.15391 |