MidgeBase gene description page [Pn.02007]

Outline

Link to gbrowse

Gene ID Pn.02007
Type Protein coding gene
Scaffold PnScaf1755
Start 52038
End 53038
Direction +

Sequence

Transcript: 879 (bp)

 ATGAATATTTCGCGATTACTTAAAACTACTACCTCAAAAGTCTTATCGTCGCCTCAGTGGTTATTGAGAAGCAATGTAAAGTTGCAATCAACAAGTGCTGCCGCACAAAAGCTAGTCGATGTCACCGTCGATGAGAAGTCGGGCATTTCAGTGGTTGCTCTGAATCGCAAGCCCGTCAACAGTCTGTCATTGGAGTTATTCAAAGAGTTTTGCGGCGTAATGGACGACTTGGAGCGAGACCGCGTCCGTGGGATGATTTTAAAGAGTTCATGTGATAATGTTTTCTCGAGTGGACTTGACATTACCGAACTCTACCCGCATCCGTCCGAGGATCGCTTCCACGCATTCTGGCTTTGGTTCCAAGAGACTTGGATTAAGCTCTATGGCTCATCATTCCCCACCGTTGCATTTATTAATGGCCACGCTCCAGCAGGCGGATGCGTCTTGGCGATTTCATGTGAATACCGAGTTATGCTGCCATACTACAAAATCGGACTCAACGAGGCTCCAGTCGGCATCGTTGCACCCGATTGGGTCATGTCCAGCTTGAAAAACGTACTGCCGAATCGGAAGGCGGAGCAGCTGTTGACCTCTGGGAAGTTGATTGATTCGCAAGAGGCGTTCGATATCGGACTCGTGGACAAGATCGTGAACAACGAGGAGGAAGCAATCGCACGAGCGGAAGAATTTATCGCGACATTCGATCATGTACCGAAGTTGGCAAGAGCACTGACGAAGCAAGGCTTCCGCAAAAATGATCTTACGCCGATGATTAAGAACCGATCGAAGGATGCCAAGCTCTTCCTCAATCATATTTTGCGCCCAGAAACTCAGAAGATCATCGGATCATACTTTAAAAGTCTTAAAGACCGCAAAAAG 

Protein: 293 (aa)

 MNISRLLKTTTSKVLSSPQWLLRSNVKLQSTSAAAQKLVDVTVDEKSGISVVALNRKPVNSLSLELFKEFCGVMDDLERDRVRGMILKSSCDNVFSSGLDITELYPHPSEDRFHAFWLWFQETWIKLYGSSFPTVAFINGHAPAGGCVLAISCEYRVMLPYYKIGLNEAPVGIVAPDWVMSSLKNVLPNRKAEQLLTSGKLIDSQEAFDIGLVDKIVNNEEEAIARAEEFIATFDHVPKLARALTKQGFRKNDLTPMIKNRSKDAKLFLNHILRPETQKIIGSYFKSLKDRKK 
Type Start End Length
CDS 52038 52304 267
CDS 52363 52513 151
CDS 52575 53035 461
intron 52305 52362 58
intron 52514 52574 61

Auto annotation result

Program/Analysis Accession Description Score/Expectation
BLASTP/NCBI-nr XP_002088992 GE18878 [Drosophila yakuba] gb|EDW88704.1| GE18878 [Drosophila yakuba] 3e-72
InterPro IPR001753 Crotonase, core
Gene Ontology(BP) GO:0008152 metabolic process
Gene Ontology(MF) GO:0003824 catalytic activity
Pfam PF00378.15 Enoyl-CoA hydratase/isomerase family 4.8e-51
Pfam PF01343.13 Peptidase family S49 0.0071

Expression level (RPKM)

Paralog/Ortholog genes

Paralogous genes

Gene ID

Orthologous genes

Species Gene ID
P. vanderplanki Pv.15391