MidgeBase gene description page [Pn.02006]
Outline
| Gene ID | Pn.02006 |
| Type | Protein coding gene |
| Scaffold | PnScaf1755 |
| Start | 46773 |
| End | 51499 |
| Direction | + |
Sequence
Transcript: 3171 (bp)
ATGGCTTTGAAGTTTTCTTCTCCATTTAAAAATTTTAATTTTTTAAGAAGTTTCTCAACATCACGCGCTACGAGAAATCTAGTGATCACGGAAGTCAATGAAAAGACGGGTTATGCAACGATTTCGCTGAATAGACCTCCCGTCAACAGCCTAAATGCTGAGATTTTTAGGGCGTTGAGCGCTGCTTTTGATGACATGGAGCGGAATCGAACGAGAGGAGTGATATTGGGCAGCACGTCGCCGAAGATTTTTTCCGCTGGACTCGAAATCACACAGCTCTGCGACAGCAGTGAAGAAAGTTTGCGTGAGTTGTGGGCGGCAGCTCAAGACTCTTGGCTGAAACTATTCGGAAGCTCCTTTCCTAGCGTCGCCGCTCTTCACGGTCATACGATTGCCGGAGGCTGTTTGCTTGCGATGTCCTGTGAATATCGAGTCATGATGCCTAACTTTAAATTCGGAATAAACGAGATCCAAGTTGGCGTCGCTCCTCCTCAGCTGATTGTTGAGACCATGAAGTTGCTGGTGAGCCGTAGAGAATTGGAACTTGCGCTCATGACAGGCAAACTTTACTCAACCGAAGAAGCGCTGCACGTTGGTCTCGTTAACGAAGCGGCAGAGAACAAGGAGGAGGTGATGAATAAATGTGAGGGATATTTGAATACATTCAGGAACATCCCTTATGATGCCCGAGCAGTCCTCAAAAAAAGCTTGAGGAAAACGGCGCTCGACTCGATCAGACTGAACAGAGAGCGGGACATTGAAAATTTTATCAAAGCAGTGAAAAATGACGAATCACAATTTGCCATAAAGTCTTATCTCAAATTACTGAAAAGTCAATCGAACAGCATCACAAGTAAGGCTGCGATGAGTACCGCCGGCAGTCAAAATGTGCAAATCGATGTGAACGATAAGACTGGCTATGCAACAGTTAAGCTCAACCGACCTCCTGCCAACAGCTTCACAATCGAGTTTTTCGAGGAAATTACCAGTGCGCTGAAGGAAATGGAGAGAAACAAAGCGAGAGGAGCGATTCCCAAAGTCTTTTGCAGCGGTCTTGACATCAGTCAAATTTTCAATGTCGAGAGAAAGGTTCTGGAAGACTTGTGGAGGGCTTCGCAAGACACATGGCTGGCAGCACACGAAAGCACTTATCCACTCGTGTGCGTGCTAAACGGCCATACAGTTGCCGGCGGTTGTTTTCTAGCCATGGCATGCGAATACCGAATAATGATGTCGAATTTCAAGATTGGAATTAATGAGGTGCAGCTGGGAGTTGCCGTACCGGCCGCTGTCATCGACACCATGAAGACCATAATTTCGCCAAGGGAGGCTGAGTTGGCGCTAGTGGGAGGCAAACTCTACTCAACAGAGGAGGCTTTCAAGGTTGGCTTAGTGGATGAAGTCGCTAGCGATAACGAGGACGCCATCAAGAGAGCCGAACTGTTTCTCGATCGATTCCGAAAAATTCCGCCTGCAGCCAGATTAAACACGAAATTACATTTCCGCAAAACAGAAATCGAATACGTTAGAAGCAATAGGGAGCAGGACATTGAAAATTTCGTCCGGTCTGTAGAAAATCCGGAAACGCAAAATGCCATTAAAATAGGAATCGCAGCAAGCGCAATTACAAGGTGTGCGAATACCTCTACGGACAACAATAAACTAGTTATCGTTGATATCAGTGATAAGACGGGCTATGCAACGTTATCGCTCAATCGACCACCCGCCAATTCCTTTAACCTTGAGCAGCTCAAATCATTTTCTAGCGCCTTGGACGAGGTCGAGAAGAGCAAGACGAGAGGAATGATTTTGACAAGTAATGTCTCGAAAATATTCTCGGTGGGATTTGATGTTAGAGAATTTTTTCACTCGGATGAGGCGAGACTTCGTGAATTTTGGAGAGTTTCTCAAGACTGTTGGCTCAAACTCTACAGCAGCTATTACCCGACGGCAGCCGCCATTAATGGCCACAATCCTGCAGGTGGTTGCTTTTTCAGCATGTCTTGCGAGTATCGGGTAATGGTCTCGAAATCAAAGATCGGCCTGAGCGGTGCGCGCCTTGGCATTGCGATTCCACTGCCCATTATTTTGACAATGAAGAGCGTAATTTCCTCGCGAGAAACAGAAGCCGCAGTTCTCTCTGGCCGACTGTTTACGACCGAAGAAGCTTTAAAAGTCGGTTTGATCGATGAGATCGCCGAAGACAAAGAGGACTCCATTAGACGAAAAATGATTTCGTCGAAATTCACTGCAGTATCGAGGCAATTATCGTGCAACAACCTCTTCAAGACTTCCAAATACTCGGCAACAAGACTCAACTCGTCACAGTCAAATACCAGTTCTATTTTGGTGGACGTCAATGATAAAAGCGGATATGCCACCGTGACTCTCAACAGCCCGCCCGTCAATAGCCTCAACCTGGAGCTACTGTCTACCTTTTCAAACGTACTTGACGACTTAAAAAAGAGCAATTCACGAGGAATGATTTTGACAAGTTCCTCACCGTCCGTATTCTGCGCTGGCTTAGATATCAACGAAATGTACAAACCTGATAAAGAGCGCGCGCGAAAATTTTGGTCAACATTGCAAGACTGCTGGATCAAGCTTTATGGATCAGAGTTTCCAACCGCTGCAGCCATCAACGGTCATTCGCCAGCCGGCGGTTGCCTGCTATCGATGAGCTGCGAGTACCGTGTAATGCTTCCCAAATTCACCATTGGCCTTAACGAAACTCAACTGGGAATTGTGGCGCCAACCTGGTTTATGGCGACCATGAGAAACACGATAAGCAACAGAGAAGCCGAACTGGCACTGACTTTGGGCCGAATGTTCACGACAGAAGAGGCTCTCAAGATCGGCATGATCGACGAAATCGCAGCAAGCAAAGAGGAGGCCATCGAAAAATGCACCGCATTTCTTGATAAGTATAAGAAAATTCCTCCACTCGCGCGCGGACTGACGAAGCAGCACTGCCGCCAAACCGATATTCAAGAGCTTGTCAGCAACAAGGAAGCAGACGTTGAGCTTTTCGTCACTGCCATTACCGACCAGAGAATTCAGAAGTCGCTCGGGAAGTATGTTGCCTTCTTGAAATGGAAATCGAGAATGAAGCCGATCATGCAGGCCTTTAAGTTCGTAAGCGGCCTCTTCAAGCCAAAGAAGAGCAAAAAG
Protein: 1057 (aa)
MALKFSSPFKNFNFLRSFSTSRATRNLVITEVNEKTGYATISLNRPPVNSLNAEIFRALSAAFDDMERNRTRGVILGSTSPKIFSAGLEITQLCDSSEESLRELWAAAQDSWLKLFGSSFPSVAALHGHTIAGGCLLAMSCEYRVMMPNFKFGINEIQVGVAPPQLIVETMKLLVSRRELELALMTGKLYSTEEALHVGLVNEAAENKEEVMNKCEGYLNTFRNIPYDARAVLKKSLRKTALDSIRLNRERDIENFIKAVKNDESQFAIKSYLKLLKSQSNSITSKAAMSTAGSQNVQIDVNDKTGYATVKLNRPPANSFTIEFFEEITSALKEMERNKARGAIPKVFCSGLDISQIFNVERKVLEDLWRASQDTWLAAHESTYPLVCVLNGHTVAGGCFLAMACEYRIMMSNFKIGINEVQLGVAVPAAVIDTMKTIISPREAELALVGGKLYSTEEAFKVGLVDEVASDNEDAIKRAELFLDRFRKIPPAARLNTKLHFRKTEIEYVRSNREQDIENFVRSVENPETQNAIKIGIAASAITRCANTSTDNNKLVIVDISDKTGYATLSLNRPPANSFNLEQLKSFSSALDEVEKSKTRGMILTSNVSKIFSVGFDVREFFHSDEARLREFWRVSQDCWLKLYSSYYPTAAAINGHNPAGGCFFSMSCEYRVMVSKSKIGLSGARLGIAIPLPIILTMKSVISSRETEAAVLSGRLFTTEEALKVGLIDEIAEDKEDSIRRKMISSKFTAVSRQLSCNNLFKTSKYSATRLNSSQSNTSSILVDVNDKSGYATVTLNSPPVNSLNLELLSTFSNVLDDLKKSNSRGMILTSSSPSVFCAGLDINEMYKPDKERARKFWSTLQDCWIKLYGSEFPTAAAINGHSPAGGCLLSMSCEYRVMLPKFTIGLNETQLGIVAPTWFMATMRNTISNREAELALTLGRMFTTEEALKIGMIDEIAASKEEAIEKCTAFLDKYKKIPPLARGLTKQHCRQTDIQELVSNKEADVELFVTAITDQRIQKSLGKYVAFLKWKSRMKPIMQAFKFVSGLFKPKKSKK
| Type | Start | End | Length |
| CDS |
46773 |
47006 |
234 |
| CDS |
47064 |
47668 |
605 |
| CDS |
48154 |
48340 |
187 |
| CDS |
48420 |
48997 |
578 |
| CDS |
49350 |
49563 |
214 |
| CDS |
49629 |
50035 |
407 |
| CDS |
50414 |
50684 |
271 |
| CDS |
50759 |
50906 |
148 |
| CDS |
50970 |
51496 |
527 |
| intron |
47007 |
47063 |
57 |
| intron |
47669 |
48153 |
485 |
| intron |
48341 |
48419 |
79 |
| intron |
48998 |
49349 |
352 |
| intron |
49564 |
49628 |
65 |
| intron |
50036 |
50413 |
378 |
| intron |
50685 |
50758 |
74 |
| intron |
50907 |
50969 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001649724 |
3-2trans-enoyl-CoA isomerase, putative [Aedes aegypti] gb|EAT43826.1| 3-2trans-enoyl-CoA isomerase, putative [Aedes aegypti] |
1e-101 |
| InterPro |
IPR001753 |
Crotonase, core |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00681.15 |
Plectin repeat |
1.5e-05 |
| Pfam |
PF00378.15 |
Enoyl-CoA hydratase/isomerase family |
6.8e-178 |
| Pfam |
PF08309.6 |
LVIVD repeat |
0.051 |
| Pfam |
PF01343.13 |
Peptidase family S49 |
3.5e-11 |
| Pfam |
PF00574.18 |
Clp protease |
0.00056 |
| Pfam |
PF09177.6 |
Syntaxin 6, N-terminal |
2.3 |
| Pfam |
PF01039.17 |
Carboxyl transferase domain |
6e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000456565 |
| D. plexippus |
DPOGS213568PA |
| B. mori |
BGIBMGA011639-TA |
| C. quinquefasciatus |
CPIJ013796 |
| D. melanogaster |
FBgn0032161 |
| B. mori |
BGIBMGA011640-TA |
| A. mellifera |
GB11035-PA |
| A. aegypti |
AAEL004755 |
| D. melanogaster |
FBgn0032162 |
| H. sapiens |
ENSP00000301729 |
| A. aegypti |
AAEL004784 |
| H. melpomene |
HMEL007116-PA |
| S. invicta |
SI2.2.0_16169 |
| P. humanus |
PHUM470740-PA |
| P. vanderplanki |
Pv.02109 |
| H. sapiens |
ENSP00000456319 |
| H. sapiens |
ENSP00000457900 |
| A. gambiae |
AGAP010130 |
| N. vitripennis |
NV12018-PA |
| D. melanogaster |
FBgn0032160 |
| P. vanderplanki |
Pv.02106 |
| M. musculus |
ENSMUSG00000024132 |
| H. sapiens |
ENSP00000455205 |
| T. castaneum |
TC003524 |