MidgeBase gene description page [Pn.02005]
Outline
| Gene ID | Pn.02005 |
| Type | Protein coding gene |
| Scaffold | PnScaf1755 |
| Start | 44425 |
| End | 46708 |
| Direction | + |
Sequence
Transcript: 1674 (bp)
ATGAATACATTACAGAGAGCATTCCGACTCGTAAATAAAAACTCATTAAAATATCTCGCGAGCCGCGACCTTTTACGATGTCAATCAACGAGCAGCGGCGGTGATCAGCCATTGGTACTCACTGAAGTAAACGATAAAACTGGATTTGCAACACTCTCGCTCAACCGTCCGCCTATGAGCAACTTTACACTTGAACTCTTGCAAGAATTTTCGAAAGCACTCGATGATGTCGAGAGCAAAAAGTATAAGGGAATGATCTTGACGAGTACATCTCCGACGGCTTTCTCGGCGGGACTCGACATGAGCGAGCTCCTCAATCCTGACGCGAAACGTCTGAAAGAGCTTCGAGCGACTTACATTGATTGCTGCATCAAACTCTACAGCTCTCTCTTCCCAACCGTCGCGAACGTGAATGGGCATGCGATAGGTGGCGGGTGCTTTCTCGCCATGGCGTGCGAGTATCGGGTGATGCTGCCGAACTTCAAAATTGGACTGAACGAAACGCAACTCGGGATTGCCATACCCGAAGTGGCGATCTTGGCCACTCGCAACATTCTCTCGTCACGCGATGCTGAGATGGCCTTGACACTCGGCCAAATCTTCACAACCGAGGAGGCAGCGAGAATCGGTCTAATCGATGAGGTGGCTAGCGACAAGGCAGATGCGACGGCAAAATCCGAAGCGTTTTTAAATAAATTTAAGAAAATCCCGGCTTTGGCTCGCGGTCTCACCAAACAGTTCTTCAGAAAGAAGGTCATCGACTTGATGACTGCGAACCGCGAAAAAGATGTCGAATCGTTTGTTAGTTACGTTTTAGATCCGGCAAGCCAGAAGTCATTGCAAGCTTTCGTCGATGCGTCAAAGAAAATTCCACTGAGAGGCTTCTCGAGATCTTTCACATCTGGTAAGGAGCTCGTTCTGATCGATGTCAACGAGAAGAATGGCTACGCCAAAATTTCCTTGAATCGACCCCCAGTCAACAGCCTCACTCCCGAATTTTTCGAGTCGATTGCGGAGGCTTTTTATGGTGTGGAAAAAAATAATTGCCGCGGAGTTATCTTGACAAGTACAAGCGAGAGTGTTTTCTGCGCTGGACTCGACATCAAGAGCCTAAATGGCGGTTCTAGGGAAAGTGTTTCGGCCATGTGGAGCGGTGCGCAAGACTGTTTCCTGCAAATTTATGGCTCCAAAATGCCGGTCGCCGCTGCAATAAACGGACATGCTCCAGCCGGCGGCTGTTTCTTGAGTCTACTGTGTGACTACCGCGTCATGCTTCCGAAATTCCTGATCGGTTTGAACGAGAGCAAGTTGGGCATCACTGTCCCGAACATGCTCATCTCTTGCATGCGAAACGTTCTCACGAAGCGTCAAGTGGAGGACTCGCTGCTGGAGGGACGACTGTTTACATCAGAGGAAGCACTCGCGATGGGATTGATTGATGAAATTGCCGAGAGCATGGAAGAGGCTGTTGAAAAGTGTGAGAAGTATTTGGACCGCTTCAAAGATCTGCCGTTTGAGGCGCGAGGAAGAACTAAGCTGCACTTGAGAGCCGCCGACTTGGAAAACTTGAAAATAAACCGACAAGCAGAGCTCGACGGATTTGTAAACAACATTTTGGAGGCGACCACTCAAGATTTTTTGAGGGATTACATGAAGAATTTGAAGAAACGAAAA
Protein: 558 (aa)
MNTLQRAFRLVNKNSLKYLASRDLLRCQSTSSGGDQPLVLTEVNDKTGFATLSLNRPPMSNFTLELLQEFSKALDDVESKKYKGMILTSTSPTAFSAGLDMSELLNPDAKRLKELRATYIDCCIKLYSSLFPTVANVNGHAIGGGCFLAMACEYRVMLPNFKIGLNETQLGIAIPEVAILATRNILSSRDAEMALTLGQIFTTEEAARIGLIDEVASDKADATAKSEAFLNKFKKIPALARGLTKQFFRKKVIDLMTANREKDVESFVSYVLDPASQKSLQAFVDASKKIPLRGFSRSFTSGKELVLIDVNEKNGYAKISLNRPPVNSLTPEFFESIAEAFYGVEKNNCRGVILTSTSESVFCAGLDIKSLNGGSRESVSAMWSGAQDCFLQIYGSKMPVAAAINGHAPAGGCFLSLLCDYRVMLPKFLIGLNESKLGITVPNMLISCMRNVLTKRQVEDSLLEGRLFTSEEALAMGLIDEIAESMEEAVEKCEKYLDRFKDLPFEARGRTKLHLRAADLENLKINRQAELDGFVNNILEATTQDFLRDYMKNLKKRK
| Type | Start | End | Length |
| CDS |
44425 |
44691 |
267 |
| CDS |
44759 |
45347 |
589 |
| CDS |
45832 |
46043 |
212 |
| CDS |
46100 |
46705 |
606 |
| intron |
44692 |
44758 |
67 |
| intron |
45348 |
45831 |
484 |
| intron |
46044 |
46099 |
56 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001649724 |
3-2trans-enoyl-CoA isomerase, putative [Aedes aegypti] gb|EAT43826.1| 3-2trans-enoyl-CoA isomerase, putative [Aedes aegypti] |
2e-73 |
| InterPro |
IPR001753 |
Crotonase, core |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00681.15 |
Plectin repeat |
0.029 |
| Pfam |
PF00378.15 |
Enoyl-CoA hydratase/isomerase family |
6.1e-90 |
| Pfam |
PF01343.13 |
Peptidase family S49 |
3.5e-10 |
| Pfam |
PF00574.18 |
Clp protease |
0.0012 |
| Pfam |
PF04463.7 |
Protein of unknown function (DUF523) |
0.0043 |
| Pfam |
PF01039.17 |
Carboxyl transferase domain |
0.0058 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000456565 |
| D. plexippus |
DPOGS213568PA |
| B. mori |
BGIBMGA011639-TA |
| C. quinquefasciatus |
CPIJ013796 |
| D. melanogaster |
FBgn0032161 |
| B. mori |
BGIBMGA011640-TA |
| A. mellifera |
GB11035-PA |
| A. aegypti |
AAEL004755 |
| D. melanogaster |
FBgn0032162 |
| H. sapiens |
ENSP00000301729 |
| A. aegypti |
AAEL004784 |
| H. melpomene |
HMEL007116-PA |
| S. invicta |
SI2.2.0_16169 |
| P. humanus |
PHUM470740-PA |
| P. vanderplanki |
Pv.02109 |
| H. sapiens |
ENSP00000456319 |
| H. sapiens |
ENSP00000457900 |
| A. gambiae |
AGAP010130 |
| N. vitripennis |
NV12018-PA |
| D. melanogaster |
FBgn0032160 |
| P. vanderplanki |
Pv.02106 |
| M. musculus |
ENSMUSG00000024132 |
| H. sapiens |
ENSP00000455205 |
| T. castaneum |
TC003524 |