MidgeBase gene description page [Pn.02000]
Outline
| Gene ID | Pn.02000 |
| Type | Protein coding gene |
| Scaffold | PnScaf1755 |
| Start | 24739 |
| End | 26600 |
| Direction | + |
Sequence
Transcript: 840 (bp)
ATGTTTTGTGGAAAGGCAACAAACGGAAATAAAACTCTAGCGCAACGACCTGCCTCAACGAGAAAGAAGAGAATTCTAAACTCATCGGAGAGCATCGCTTTAAAAATAGAGATTGAGAGCAAGTTTCGAACATTGGCCGTGTCGCACACGATCGGAAATCGATGCGTCGATAAAACGATTGGAAGTGTATGCAATGCAACTTTAAATCGAAGTCTTAAAATCCCAATAGTCATGCCAGAATATAAAGTTTTCTACTTTAACGTGAAGGCCCTCGGTGAGCCGCTCCGTTTCCTTTTGTCTTACGGAAACCTTCCATTCGAGGATGTCCGCATCTCAAGGAATGACTGGCCTGCATTGAAGCCTAGCATGCCAATGAATCAATTGCCTGTTTTGGAGGTCGACGGAAAGCGTGTGAACCAGTCACTTGCCTGCTGTCGCTTCATTGCAAAGGCCGTCGGACTGGCCGGCAACGACGACTGGGAGAACTTGCAAATCGACACCGTCGCCGATACTGTCAACGACTTCCGTCTGAAAATCGCTGTCGTGTCGTATGAGCGCGATGATGAGGTGAAGGAGAAGAAGCTCCAGACTCTCAACAACGAAGTTATTCCGTTTTATCTCGAGAAATTGGACGACATTGCTAGAGAAAATGGCGGCTTCTTGGCAGCCGGAAGACTTACATGGGCCGACTTCTACTTTGCCGGCATCATCGACTATCTCAATTACCTGGCCAAGCAAGACTTGACAGCCAACCACGAAAATTTGAGAAAAGTGATTGACAATGTCGTCGGCCAGGAGCAAGTTCAAAATTGGATCGCAAACCGACCACAAACCGACATC
Protein: 280 (aa)
MFCGKATNGNKTLAQRPASTRKKRILNSSESIALKIEIESKFRTLAVSHTIGNRCVDKTIGSVCNATLNRSLKIPIVMPEYKVFYFNVKALGEPLRFLLSYGNLPFEDVRISRNDWPALKPSMPMNQLPVLEVDGKRVNQSLACCRFIAKAVGLAGNDDWENLQIDTVADTVNDFRLKIAVVSYERDDEVKEKKLQTLNNEVIPFYLEKLDDIARENGGFLAAGRLTWADFYFAGIIDYLNYLAKQDLTANHENLRKVIDNVVGQEQVQNWIANRPQTDI
| Type | Start | End | Length |
| CDS |
24739 |
24779 |
41 |
| CDS |
24841 |
25024 |
184 |
| CDS |
25203 |
25315 |
113 |
| CDS |
25396 |
25421 |
26 |
| CDS |
26004 |
26171 |
168 |
| CDS |
26233 |
26375 |
143 |
| CDS |
26433 |
26597 |
165 |
| intron |
24780 |
24840 |
61 |
| intron |
25025 |
25202 |
178 |
| intron |
25316 |
25395 |
80 |
| intron |
25422 |
26003 |
582 |
| intron |
26172 |
26232 |
61 |
| intron |
26376 |
26432 |
57 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR27737 |
hypothetical protein AND_05218 [Anopheles darlingi] |
7e-90 |
| InterPro |
IPR004046 |
Glutathione S-transferase, C-terminal |
|
| InterPro |
IPR010987 |
Glutathione S-transferase, C-terminal-like |
|
| InterPro |
IPR017933 |
Glutathione S-transferase/chloride channel, C-terminal |
|
| InterPro |
IPR004045 |
Glutathione S-transferase, N-terminal |
|
| InterPro |
IPR012336 |
Thioredoxin-like fold |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13410.1 |
Glutathione S-transferase, C-terminal domain |
0.00091 |
| Pfam |
PF13409.1 |
Glutathione S-transferase, N-terminal domain |
0.0019 |
| Pfam |
PF02798.15 |
Glutathione S-transferase, N-terminal domain |
5.5e-12 |
| Pfam |
PF13417.1 |
Glutathione S-transferase, N-terminal domain |
0.00023 |
| Pfam |
PF00043.20 |
Glutathione S-transferase, C-terminal domain |
9.6e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS201022PA |
| P. humanus |
PHUM284770-PA |
| M. musculus |
ENSMUSG00000029919 |
| N. vitripennis |
NV15805-PA |
| P. vanderplanki |
Pv.05718 |
| B. mori |
BGIBMGA009107-TA |
| H. sapiens |
ENSP00000295256 |
| H. melpomene |
HMEL003617-PA |
| P. vanderplanki |
Pv.09145 |
| T. castaneum |
TC003496 |
| T. castaneum |
TC003232 |
| S. invicta |
SI2.2.0_80623 |
| N. vitripennis |
NV14185-PA |
| D. plexippus |
DPOGS201020PA |
| T. castaneum |
TC013948 |
| T. castaneum |
TC003231 |
| N. vitripennis |
NV14196-PA |
| A. gambiae |
AGAP010404 |
| T. castaneum |
TC000067 |
| D. plexippus |
DPOGS201021PA |
| C. quinquefasciatus |
CPIJ006160 |
| A. mellifera |
GB14372-PA |
| T. castaneum |
TC003233 |
| A. aegypti |
AAEL011741 |
| N. vitripennis |
NV14977-PA |
| D. melanogaster |
FBgn0010226 |
| S. invicta |
SI2.2.0_80577 |