MidgeBase gene description page [Pn.01995]
Outline
| Gene ID | Pn.01995 |
| Type | Protein coding gene |
| Scaffold | PnScaf1754 |
| Start | 6047 |
| End | 7339 |
| Direction | + |
Sequence
Transcript: 1050 (bp)
ATGTCGACTTGGAGTCCAGCATATTCTGATGAAGAAGCAAAAGAACGTGCCGAAGAGCGTGATGAGTACAACATCGACGGGACTGTGCAATTGCGAAATCCAAACATCGAGTTGATGGATCAAGATATTCTCTACCATTTAGCTTTAGGGAGCGGTAGCCATGACCTCCAGCAAATGTTTGGCGATATAAAGTTTATTTGTTTGGGAGGAACTCCGAAAAGAATGGAAGAATTTGCATACTACATTATGGACGAAATCGGATATAAACTCCCAACGGGAACACAACTGCAAGATATCAGTGCTTTTTCGTACCGCTACTCCATGTACAAGGTCGGCCCAATATTATCGGTATCTCATGGCATGGGAGCATCGAGCATCGGTATTTTGCTGCACGAAATCATCAAACTTATGTATCACGCCAAATGCAAGGATCCAATTTTCCTTAGAATCGGCACATGCGGTGGCATTGGAATTGAGGGAGGAACAGTCGTGGTCTCAAACGAATCTGTCGACGGAATGATGCGAAGCTCTTATGAGATGGTCGTGCTCGGAAAGACAGTTCAGCGAGCATCGAAATTAGATCAGAGATTAGCACGCGAAATTCTTTCACTAGCAGATCCCGCACAAGATCCATACGAGACCGTTACGGGCAAAACAATGTGCACCTTTGATTTTTATGAGGGTCAGGGACGACTTGATGGAGCATTTTGCGATTATACCGAAAATGATAAAATGGAATATCTGGAGAAGTGCAGAGACTTTGGCGTCGTTAACATTGAAATGGAGTCATTAGTGTTCAGTGCATTGACACATCACGCCGGTATAAAGGCAGCAATCATTTGCGTTGTTCTGTTAAATCGACTCATTGGAGATCAAGTGATGGCTCCAAAAGAAGTCATGAACGAGTGGCAGAAGAGACCTCAAATTCTCGTTTCTCGTTTCATTCGAAGACAACTGGCGAAGCAAGGCCGCTTGAACAAAGTGCATGGTGGAAGCATTAAATCTCCAAGGAGATTTAAATTAGTGCAGCAAGAGAGTGAAGCGCATGAA
Protein: 350 (aa)
MSTWSPAYSDEEAKERAEERDEYNIDGTVQLRNPNIELMDQDILYHLALGSGSHDLQQMFGDIKFICLGGTPKRMEEFAYYIMDEIGYKLPTGTQLQDISAFSYRYSMYKVGPILSVSHGMGASSIGILLHEIIKLMYHAKCKDPIFLRIGTCGGIGIEGGTVVVSNESVDGMMRSSYEMVVLGKTVQRASKLDQRLAREILSLADPAQDPYETVTGKTMCTFDFYEGQGRLDGAFCDYTENDKMEYLEKCRDFGVVNIEMESLVFSALTHHAGIKAAIICVVLLNRLIGDQVMAPKEVMNEWQKRPQILVSRFIRRQLAKQGRLNKVHGGSIKSPRRFKLVQQESEAHE
| Type | Start | End | Length |
| CDS |
6047 |
6111 |
65 |
| CDS |
6171 |
6565 |
395 |
| CDS |
6624 |
6703 |
80 |
| CDS |
6763 |
6904 |
142 |
| CDS |
6969 |
7336 |
368 |
| intron |
6112 |
6170 |
59 |
| intron |
6566 |
6623 |
58 |
| intron |
6704 |
6762 |
59 |
| intron |
6905 |
6968 |
64 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_310948 |
AGAP000188-PA [Anopheles gambiae str. PEST] ref|XP_003436935.1| AGAP000188-PB [Anopheles gambiae str. PEST] gb|EAA45146.4| AGAP000188-PA [Anopheles gambiae str. PEST] gb|EGK96511.1| AGAP000188-PB [Anopheles gambiae str. PEST] |
1e-153 |
| InterPro |
IPR010059 |
Uridine phosphorylase, eukaryotic |
|
| InterPro |
IPR000845 |
Nucleoside phosphorylase domain |
|
| InterPro |
IPR018017 |
Nucleoside phosphorylase |
|
| Gene Ontology(BP) |
GO:0009116 |
nucleoside metabolic process |
|
| Gene Ontology(BP) |
GO:0009166 |
nucleotide catabolic process |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0004850 |
uridine phosphorylase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF01048.15 |
Phosphorylase superfamily |
4.3e-28 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM411930-PA |
| A. gambiae |
AGAP000188 |
| H. sapiens |
ENSP00000406224 |
| P. vanderplanki |
Pv.09630 |
| B. mori |
BGIBMGA013774-TA |
| S. invicta |
SI2.2.0_07414 |
| H. sapiens |
ENSP00000342878 |
| D. plexippus |
DPOGS208154PA |
| H. sapiens |
ENSP00000378931 |
| N. vitripennis |
NV13689-PA |
| A. mellifera |
GB13199-PA |
| T. castaneum |
TC004559 |
| A. aegypti |
AAEL005839 |
| N. vitripennis |
NV13688-PA |
| C. quinquefasciatus |
CPIJ015789 |
| D. melanogaster |
FBgn0039464 |
| D. plexippus |
DPOGS208576PA |
| P. vanderplanki |
Pv.13392 |
| M. musculus |
ENSMUSG00000020407 |
| B. mori |
BGIBMGA010642-TA |
| H. sapiens |
ENSP00000330032 |
| H. melpomene |
HMEL003128-PA |