MidgeBase gene description page [Pn.01949]
Outline
| Gene ID | Pn.01949 |
| Type | Protein coding gene |
| Scaffold | PnScaf1713 |
| Start | 5896 |
| End | 6460 |
| Direction | + |
Sequence
Transcript: 489 (bp)
ATGAGTATTTCTCGGTGGTCCGGTCGCGTAGCTGTAGTGACGGGTGCAAGTTCCGGCATCGGTGCAGCGACTGTCGTGGAGCTCTGCAAGAACGGACTCATCACAGTTGGCATCGCTCGTCGCGTCGAAAAAATCGAAGCGCTGAGGTCGCAGCTGACACCGGAGCAGCAGAAGAACTTTCACGCAATCAAGTGCGACATCTCGAACGAGGTCGAAGTCGTGCGAACTTTCAATGAAATCGAGAAAAAATTCGGCGGCGTCGACGTTCTCGTGAACAACGCGGGAATTCTCCCGAAAACCAGCCTCACCGACCCGAACAACTCTGCTGATACGCAGAGCGTCATCAACACAAACTTGATCGGAGCCATCAATTGCACGCGCGAGGCCGCGAAGTCAATTCGGGAGCGAGGTGTCGACGGTCACGTTATTCACGTTAATAGCATTGCGGGCCATTTTATGCCCATCGGCAAGAGTTCATCAAGGAAAAAC
Protein: 163 (aa)
MSISRWSGRVAVVTGASSGIGAATVVELCKNGLITVGIARRVEKIEALRSQLTPEQQKNFHAIKCDISNEVEVVRTFNEIEKKFGGVDVLVNNAGILPKTSLTDPNNSADTQSVINTNLIGAINCTREAAKSIRERGVDGHVIHVNSIAGHFMPIGKSSSRKN
| Type | Start | End | Length |
| CDS |
5896 |
6356 |
461 |
| CDS |
6430 |
6457 |
28 |
| intron |
6357 |
6429 |
73 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001867078 |
serine 3-dehydrogenase [Culex quinquefasciatus] gb|EDS44405.1| serine 3-dehydrogenase [Culex quinquefasciatus] |
9e-47 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
0.005 |
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
2e-06 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
5.4e-06 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
3.2e-24 |
| Pfam |
PF12242.3 |
NAD(P)H binding domain of trans-2-enoyl-CoA reductase |
0.0015 |
| Pfam |
PF07813.7 |
LTXXQ motif family protein |
0.076 |
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
9.5e-07 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
0.0044 |
| Pfam |
PF12076.3 |
WAX2 C-terminal domain |
0.07 |
| Pfam |
PF08659.5 |
KR domain |
4.4e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes