MidgeBase gene description page [Pn.01947]
Outline
| Gene ID | Pn.01947 |
| Type | Protein coding gene |
| Scaffold | PnScaf1713 |
| Start | 2528 |
| End | 3579 |
| Direction | + |
Sequence
Transcript: 792 (bp)
ATGAGCATTTCGCGTTGGTCTGGTCGCGTGGCTGTGGTTACTGGAGCAAGTGGCGGCATCGGCGAAGCGGTCTGCATTGAGCTGTGCAAGAACGGCTTGATAACGGTCGGCCTCGCCCGTCGTGTGGAGAGAATGCAAGAAATCAAGAAGAGCTTGACGAGCGAGCAGCAGAAGCTCTTCCACGCCATGCAGTGCGATGTCTCGAACGAGCCGGAAATTGTGCGAGTTTTCGCCGAAATCGAGAAGAAATTTGGCGGCGTCGACGTGCTCGTGAATAATGCGGGCGTCATCGCGAAGTTGTGTCTCACGGATGAAAGCAGCTCCGCCGACATGAAGCGCGTGATGGACACGAACGTGATGGGCATCATCCACTGCACTCGCGAGGCCGTGAAGAGTGTTCGCAAGCGAAAGAGTGACGCTCACATCATTCACGTGAACAGCGTTGCCGGCCACTCGATGCCCTTCTACCAGGAGTTTGTTAATCGTGGCATCTACCATGTCAGCAAGTACGGCGTCACTGCGCTGGCCGAGCAGCATCGACAGGAGTTTATCGAGGAGAAGCTCAACGTCAAAGTCACTTCACTTAGCCCGGGAGCCGTCGCCACCGACATATTCAGCACGATGAATTTGGAAAAATTGTCAAAGGAAAAGCAAAAAGAGATGATGGACAAGATGTCGTCAATTCCCTTTCTGGCACCAAAGGACGTCGCCGATGCAGTCGTTTACCTCCTCAGCACACCGCCAAACGTCCTAATCACCGAGCTCACGATTCGGCCGATGAATGAAACGTTT
Protein: 264 (aa)
MSISRWSGRVAVVTGASGGIGEAVCIELCKNGLITVGLARRVERMQEIKKSLTSEQQKLFHAMQCDVSNEPEIVRVFAEIEKKFGGVDVLVNNAGVIAKLCLTDESSSADMKRVMDTNVMGIIHCTREAVKSVRKRKSDAHIIHVNSVAGHSMPFYQEFVNRGIYHVSKYGVTALAEQHRQEFIEEKLNVKVTSLSPGAVATDIFSTMNLEKLSKEKQKEMMDKMSSIPFLAPKDVADAVVYLLSTPPNVLITELTIRPMNETF
| Type | Start | End | Length |
| CDS |
2528 |
3106 |
579 |
| CDS |
3364 |
3576 |
213 |
| intron |
3107 |
3363 |
257 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001867078 |
serine 3-dehydrogenase [Culex quinquefasciatus] gb|EDS44405.1| serine 3-dehydrogenase [Culex quinquefasciatus] |
1e-66 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
0.00012 |
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
6e-13 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
4.4e-08 |
| Pfam |
PF09378.5 |
HAS barrel domain |
0.034 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
1.8e-27 |
| Pfam |
PF12242.3 |
NAD(P)H binding domain of trans-2-enoyl-CoA reductase |
0.054 |
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
2.4e-07 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
0.00039 |
| Pfam |
PF05368.8 |
NmrA-like family |
0.0011 |
| Pfam |
PF08659.5 |
KR domain |
2.6e-11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.11082 |
| Pn.01946 |
| Pn.06730 |
| Pn.06604 |
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.10631 |
| N. vitripennis |
NV15599-PA |
| C. quinquefasciatus |
CPIJ016921 |
| T. castaneum |
TC015602 |
| T. castaneum |
TC010240 |
| T. castaneum |
TC015601 |
| S. invicta |
SI2.2.0_11801 |
| M. musculus |
ENSMUSG00000034449 |
| H. melpomene |
HMEL013944-PA |
| H. sapiens |
ENSP00000251312 |
| C. quinquefasciatus |
CPIJ002522 |
| A. aegypti |
AAEL017320 |
| P. vanderplanki |
Pv.14147 |
| D. plexippus |
DPOGS212697PA |
| N. vitripennis |
NV18399-PA |
| P. vanderplanki |
Pv.11149 |
| B. mori |
BGIBMGA005248-TA |
| N. vitripennis |
NV17960-PA |
| N. vitripennis |
NV13417-PA |
| H. melpomene |
HMEL008611-PA |
| N. vitripennis |
NV17959-PA |
| T. castaneum |
TC003807 |
| T. castaneum |
TC015603 |
| N. vitripennis |
NV13416-PA |
| T. castaneum |
TC015414 |
| H. melpomene |
HMEL013953-PA |
| A. aegypti |
AAEL017452 |
| D. melanogaster |
FBgn0038878 |
| A. mellifera |
GB11351-PA |
| A. gambiae |
AGAP005503 |
| P. humanus |
PHUM184020-PA |
| D. melanogaster |
FBgn0026268 |
| A. aegypti |
AAEL017179 |
| D. melanogaster |
FBgn0031775 |
| A. gambiae |
AGAP005645 |
| N. vitripennis |
NV15992-PA |
| P. vanderplanki |
Pv.11148 |
| A. gambiae |
AGAP005501 |
| N. vitripennis |
NV18398-PA |
| C. quinquefasciatus |
CPIJ004598 |
| N. vitripennis |
NV11076-PA |
| C. quinquefasciatus |
CPIJ004600 |
| N. vitripennis |
NV14799-PA |
| T. castaneum |
TC015159 |
| A. aegypti |
AAEL017302 |
| D. melanogaster |
FBgn0036380 |
| A. mellifera |
GB12522-PA |
| A. gambiae |
AGAP005502 |
| D. melanogaster |
FBgn0263830 |
| A. aegypti |
AAEL001461 |
| C. quinquefasciatus |
CPIJ016923 |
| D. melanogaster |
FBgn0069973 |
| A. aegypti |
AAEL007669 |
| N. vitripennis |
NV14020-PA |
| C. quinquefasciatus |
CPIJ016922 |
| D. melanogaster |
FBgn0030332 |
| A. aegypti |
AAEL010075 |
| T. castaneum |
TC005026 |
| T. castaneum |
TC015554 |
| N. vitripennis |
NV17958-PA |
| A. gambiae |
AGAP005499 |
| N. vitripennis |
NV12492-PA |
| T. castaneum |
TC015599 |
| P. vanderplanki |
Pv.14153 |
| T. castaneum |
TC014887 |
| T. castaneum |
TC015161 |
| H. sapiens |
ENSP00000456222 |
| H. melpomene |
HMEL013949-PA |
| C. quinquefasciatus |
CPIJ004599 |
| N. vitripennis |
NV17961-PA |
| C. quinquefasciatus |
CPIJ004601 |
| T. castaneum |
TC010257 |
| N. vitripennis |
NV13189-PA |
| T. castaneum |
TC015100 |