MidgeBase gene description page [Pn.01916]
Outline
| Gene ID | Pn.01916 |
| Type | Protein coding gene |
| Scaffold | PnScaf1684 |
| Start | 26683 |
| End | 38068 |
| Direction | + |
Sequence
Transcript: 3513 (bp)
ATGGTGCGAGATTCAAATTCTTTGCGCAACGGTTCGTTCACTCGTGAAGTAATCGGAACTATTTCGACCAAGTCATTGCAGATGGTAATCATGCAACCGCCACTACCTCCACTTCCAGCCAACGCACGATTTTTGGCTTTAAGACTATTCGGCACTCCGCAATCACGCACCCTCTACTTCCTAGTCGAAGCCAAAAGCCGCGTACGAGAGGTGTACGCACAGACATGCCATCACTTCTCAAAGCAAGGAATGCTGGACACCGAACTGTTCGGTTTGGCAGTTCTCATCGATGGGGAGTACCTCTTTGCCGATCCCGAGTCCAAGCTCTCGAAGTATGGCCCGAAGAGCTGGCGATCGTCGCACACTCACGGACTCGACGCGAATGGCAAGCCTCTCTTGGAGTTTCACTTCCGCGTGCAATTCTACATTGAGAGCCCGCTCATGCTTCGCGACGAAATCACACGACATCACTACTATCTCCAGCTGAAGTCCAACGCAGTCGGCCGCGAAATTCCCAAGGAGTGCTCCGATCAGTCGCTCCTCCTCCTCGGCGGTCTCTCGCTGCAGGCCGACCTCGGCGACTGTCCCTCGACCGACGACTCGAGCGCCAGCAAGAGCGACTACTTCCGCGCCGAGGACTACATTCCCTCGACCCTCCGCACCAGCTGGGGCATCTCGGCACTGCACTCTTGCCACCGCGAGAACCGTGGAATGTCGCGTGCCGACGCCGAGACGCACTTCATACGCGAGGCGTGCGGCCTCCACGAGGCAATCAACGCGCACATATTCCGAATGAGGGGCAACAAGAGCGAGAATGGCGCCGGCTCAGTGGTGCTGATCATCTACGCCAAGGGCTTGAAGATCGTCAACGAGACGTCGCAGCCGGTGACGTTTCTGTGGCCGTCGATCAGCAAGCTCAGCTTCGACCGGAAGAAGTTCGAGCTGCGCTCGGGCGAGAGCAAGATCACGCTCTACTCGGGCAACGACGACAAGAACAAGATGCTGCTGGCGCTGTGCCGCGAGACACACCAGTTCTCCATGAAGATCGCGCCGCGCCTCACCGAGGCGATAAAGCGCGAGGAGGAGGAGAGCAACTGTATACACGCGTGCTATCTGTACTCGCGCGCCCTCAACATGCAGTACAAGAGCAAGAACGACCAACGCATCTCGGTCATCTCGAGCACGAGCTCGAACACGACGTCGGGCATCGTGAGCGACCGCGTGCACTCCGAGGACGAGCTGGAGATCCTCATCAACACGCCGCCCATCGCAGCGCCCTCCACCGAGAGCCTCGCGCTCGCCCACCTTCTCGACTGCCCGAGCGTCTCGCGCCAGACGTCGTCCGTGGGGCAGGTGTCGCTCAAGGACATCGGCGACACGTTCGCGGCGCTCTCGATGCGCTCCAACACGCGCTCCACCAGCAGCGAAGGCACCGAGACGCTCAAGGAGCGCACCAGCGAGAAGGACTGCGACGCCACCGTGGTGGTGGTCACGACGGCCGATTCGTTGTCGCTCTCGCAGCACCGTGGAGGCAGCAGTCGGAGTAGCAGCCTCGAGCTGGGTTTCAGTCACACGGCGCAGAATTCCACCGTCAGCGAGATCACCACGTCGGATGGCGAGCGCTACACGCACGCCGACTCGCAGCATGACGACGACGAGGAGACAATCTCGGGCGTGTACGCGCTCAACGACAACCAGGCGCCGACCGAGACGAGCGGCGTGTACACGATGAACAGCAGCGAACTGACGGGACAGTCGTCGGAGATCGCCGAGTCGGAGTCGCACGAGAGCTCCCACTACGGCAGCTTCCATCCCAACAGCGAGATGGGCGACAAGCTCGTGGTGAACATCAACATCGACTCGGTCGACGGCGACTTCCGGCAGCGACTCGACAGCGAGGACTCGAACACATTTCGCCTGCGCTCCGACTCCAACATCAGCGCCGCCGGGTCGTTCCGCGGCGACGGCAGCGATCCCACCGACAAGAAGCACAACCCGCTCACGGCCGAAGAGCTGACCGACCTGATTGTCGGTCGCGGCACCTATCCGTCGCGCAAGACCGGCGAGAGCTACTTGCAGGGCAGCGAGGACACCGCGCCGACCGAGGACGAGTACGAGAAGGACTTGCTCGAGGTGACGCCGCCCGCGCCACCGCAACGCATCCAGCAACAGCAGCTACAGCAACAGCAGCAGAACGAGATGGCAGCCGCACAGTCGCAGGAGACGCCGGCGCGCTTCATCACCACACGGCCGCACATCAACATCCTCAAGGCGCACACGACGATGTCGCCGCTCCCACCGCCGACGGCCACCTCGCTAGGTATTCCAATCGTTCCCTATCACAACTTGCACACGAGCACGCACCACAAGCCGCACCTCTCGCACACGTCGCGCTACGCCAGCGAGACGGGCACGGCACCGAGGACGTGCGTGCTGCTGCCGGTCATCAAGCCGCGCACGCAGCCGTACATCGAGCTGTACCAGCAGCAGCTGTACAGCGACGTCGACTACGTGATCTACCCGCTCCAGGACCCGGCCACTCAGCCGCCGCCCTATCTCGCCTATCACACCGTGCGAGCGCACAACCGCAGCTGGGATGGCAACCACGCTCTCTACCGCAGCACGCCCTTCCTCTCGATGGCCATCTCGTCGCCGTCTCGCTACGCCTCCACGCAGAATCTGTCCGACACTCTCTGCTCCTCCTACGAGCCACCGCCGCCACTTCCGCCTCTCCGGCCGCCGAGAATCGCGCATAAACCCGCCGCCAGCACCATCTCGCGCCGACCCATTCCCATACCGCCGGCCTACGAGAAGAAGCCGATCCGGAAACCGCCGATGCCGGCGCCCATCGAAGTGCCACACACGCCGCCCTCTGTGCCGGCGAAGCCGTCGACGCTGAAGACTTCCGCCTCTTCATCGAGCATGAAGCTGCAGTCGAAGTCTTCGACCAATCTCACCACCTGCTTGGACTCGCCGAAGGTGACCGCCACAGCAGCGCCGACCTCCTCTACAGCCGCACCCGCGACATCGCCAGCGGCAAAGCCACTCGACCTGAAGCTCTCGCACGTCATTTGTCCCGAGTCGAACCGCATAATCGCGCCGGCCGCTCTGCAGAAGCAAATCGACATCCAGATCTTGCGCGAAAAGAGCCGAAACCTCGACCTGCCGCTCATCCAGGCGCTCTGCAACGACCGCTCGCTGCTGAAGCAAACGAAGGCGTTTGTGGCGAACCCGAAGCAGCAGCACCAGCGCTCGTCACTGCAGAGCAACAGCTCCACGCTCTCGTCGCTGCCCAAGTCGAAATATCCTGTATCAGGACTCAACACGACGCAGCTCTCGTCGTCAACGGCGACGGCCGTGGCCAAGGGCCGCAAGACGACCATCAGCCACCGGCATCCGAACGACAAGCTGCCGCCGCTGCCGGTGAGCAGCAGTGGAGGCGCGAACAAGAACAACTACGTGATGGATCCGATTCCGCTGAAGCAGAAGATCAGCCAGCAGAACACGAACCTC
Protein: 1171 (aa)
MVRDSNSLRNGSFTREVIGTISTKSLQMVIMQPPLPPLPANARFLALRLFGTPQSRTLYFLVEAKSRVREVYAQTCHHFSKQGMLDTELFGLAVLIDGEYLFADPESKLSKYGPKSWRSSHTHGLDANGKPLLEFHFRVQFYIESPLMLRDEITRHHYYLQLKSNAVGREIPKECSDQSLLLLGGLSLQADLGDCPSTDDSSASKSDYFRAEDYIPSTLRTSWGISALHSCHRENRGMSRADAETHFIREACGLHEAINAHIFRMRGNKSENGAGSVVLIIYAKGLKIVNETSQPVTFLWPSISKLSFDRKKFELRSGESKITLYSGNDDKNKMLLALCRETHQFSMKIAPRLTEAIKREEEESNCIHACYLYSRALNMQYKSKNDQRISVISSTSSNTTSGIVSDRVHSEDELEILINTPPIAAPSTESLALAHLLDCPSVSRQTSSVGQVSLKDIGDTFAALSMRSNTRSTSSEGTETLKERTSEKDCDATVVVVTTADSLSLSQHRGGSSRSSSLELGFSHTAQNSTVSEITTSDGERYTHADSQHDDDEETISGVYALNDNQAPTETSGVYTMNSSELTGQSSEIAESESHESSHYGSFHPNSEMGDKLVVNINIDSVDGDFRQRLDSEDSNTFRLRSDSNISAAGSFRGDGSDPTDKKHNPLTAEELTDLIVGRGTYPSRKTGESYLQGSEDTAPTEDEYEKDLLEVTPPAPPQRIQQQQLQQQQQNEMAAAQSQETPARFITTRPHINILKAHTTMSPLPPPTATSLGIPIVPYHNLHTSTHHKPHLSHTSRYASETGTAPRTCVLLPVIKPRTQPYIELYQQQLYSDVDYVIYPLQDPATQPPPYLAYHTVRAHNRSWDGNHALYRSTPFLSMAISSPSRYASTQNLSDTLCSSYEPPPPLPPLRPPRIAHKPAASTISRRPIPIPPAYEKKPIRKPPMPAPIEVPHTPPSVPAKPSTLKTSASSSSMKLQSKSSTNLTTCLDSPKVTATAAPTSSTAAPATSPAAKPLDLKLSHVICPESNRIIAPAALQKQIDIQILREKSRNLDLPLIQALCNDRSLLKQTKAFVANPKQQHQRSSLQSNSSTLSSLPKSKYPVSGLNTTQLSSSTATAVAKGRKTTISHRHPNDKLPPLPVSSSGGANKNNYVMDPIPLKQKISQQNTNL
| Type | Start | End | Length |
| CDS |
26683 |
26737 |
55 |
| CDS |
27119 |
27158 |
40 |
| CDS |
27217 |
27264 |
48 |
| CDS |
27335 |
27480 |
146 |
| CDS |
33912 |
33991 |
80 |
| CDS |
34236 |
35341 |
1106 |
| CDS |
35393 |
35978 |
586 |
| CDS |
36036 |
36137 |
102 |
| CDS |
36213 |
36269 |
57 |
| CDS |
36333 |
36398 |
66 |
| CDS |
36465 |
36647 |
183 |
| CDS |
36747 |
36815 |
69 |
| CDS |
36876 |
37027 |
152 |
| CDS |
37082 |
37166 |
85 |
| CDS |
37248 |
37347 |
100 |
| CDS |
37428 |
38065 |
638 |
| intron |
26738 |
27118 |
381 |
| intron |
27159 |
27216 |
58 |
| intron |
27265 |
27334 |
70 |
| intron |
27481 |
33911 |
6431 |
| intron |
33992 |
34235 |
244 |
| intron |
35342 |
35392 |
51 |
| intron |
35979 |
36035 |
57 |
| intron |
36138 |
36212 |
75 |
| intron |
36270 |
36332 |
63 |
| intron |
36399 |
36464 |
66 |
| intron |
36648 |
36746 |
99 |
| intron |
36816 |
36875 |
60 |
| intron |
37028 |
37081 |
54 |
| intron |
37167 |
37247 |
81 |
| intron |
37348 |
37427 |
80 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_319884 |
AGAP009126-PA [Anopheles gambiae str. PEST] gb|EAA14701.4| AGAP009126-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR019748 |
FERM central domain |
|
| InterPro |
IPR019749 |
Band 4.1 domain |
|
| InterPro |
IPR018980 |
FERM, C-terminal PH-like domain |
|
| InterPro |
IPR011993 |
Pleckstrin homology-like domain |
|
| InterPro |
IPR000299 |
FERM domain |
|
| InterPro |
IPR014352 |
FERM/acyl-CoA-binding protein, 3-helical bundle |
|
| Gene Ontology(CC) |
GO:0005856 |
cytoskeleton |
|
| Pfam |
PF00373.13 |
FERM central domain |
5.1e-15 |
| Pfam |
PF09380.5 |
FERM C-terminal PH-like domain |
1.2e-14 |
| Pfam |
PF10649.4 |
Protein of unknown function (DUF2478) |
0.056 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB18620-PA |
| S. invicta |
SI2.2.0_01971 |
| A. mellifera |
GB13549-PA |
| D. plexippus |
DPOGS214064PA |
| H. sapiens |
ENSP00000283309 |
| C. quinquefasciatus |
CPIJ000761 |
| A. aegypti |
AAEL008495 |
| D. melanogaster |
FBgn0004583 |
| H. sapiens |
ENSP00000440078 |
| H. melpomene |
HMEL008273-PA |
| H. sapiens |
ENSP00000414115 |
| P. vanderplanki |
Pv.16778 |
| T. castaneum |
TC012545 |
| B. mori |
BGIBMGA010558-TA |
| N. vitripennis |
NV13437-PA |
| A. gambiae |
AGAP009126 |