MidgeBase gene description page [Pn.01886]
Outline
| Gene ID | Pn.01886 |
| Type | Protein coding gene |
| Scaffold | PnScaf1663 |
| Start | 13382 |
| End | 14004 |
| Direction | + |
Sequence
Transcript: 525 (bp)
ATGCAGAATGCACTTATGAAGTGGGAGAAGGAAAACGGCATAAATCTGTCGGAAGCAAAGGAGATTGGCTTGCAGTTTCAAATACCGCCACTCAAGAGCATGACCATGGATCTTGCCGTTCTCACTAATTGCGAAAAATTGAGTTTGTCGACAAACAACATTGAAAGCATATTCCTCCCACCGTCACTGCGAAACCTCAAAATCTTGGCACTTGGCAGAAATAACATAAAAAGCTTGGCAGGCTTGGAGGTGCTGGGCGAGACGCTGGAGGAGCTGTGGATCAGCTACAATTTCATTTCACTGCTCAAAAGCATTGAAGCGATGAAAAATTTGAGAAAGCTTTACATCGCCCACAACCAGGTTCGCGATTGGAATGAGTTTCAGCGACTGTCGGCACTCAATGAGAATTTGCGCGAACTGATTTTTCTCGGAAATCCACTTGCCGCCAGTCAACAGTTTCGCAGCGAAGCCATTAAGCGACTTCCCTTCCTCAAAATGCTCGACTCCTTTCCCGCCTCCTTCAAC
Protein: 175 (aa)
MQNALMKWEKENGINLSEAKEIGLQFQIPPLKSMTMDLAVLTNCEKLSLSTNNIESIFLPPSLRNLKILALGRNNIKSLAGLEVLGETLEELWISYNFISLLKSIEAMKNLRKLYIAHNQVRDWNEFQRLSALNENLRELIFLGNPLAASQQFRSEAIKRLPFLKMLDSFPASFN
| Type | Start | End | Length |
| CDS |
13382 |
13627 |
246 |
| CDS |
13723 |
14001 |
279 |
| intron |
13628 |
13722 |
95 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003442623 |
PREDICTED: dynein light chain 1, axonemal-like [Oreochromis niloticus] |
5e-45 |
| InterPro |
IPR025875 |
Leucine rich repeats (2 copies) |
|
| InterPro |
IPR001611 |
Leucine-rich repeat |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
4.4e-14 |
| Pfam |
PF13855.1 |
Leucine rich repeat |
5e-06 |
| Pfam |
PF13504.1 |
Leucine rich repeat |
1.1e-05 |
| Pfam |
PF00560.28 |
Leucine Rich Repeat |
4.1e-06 |
| Pfam |
PF13516.1 |
Leucine Rich repeat |
0.0005 |
| Pfam |
PF05725.7 |
FNIP Repeat |
6.1 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.01838 |