MidgeBase gene description page [Pn.01864]
Outline
| Gene ID | Pn.01864 |
| Type | Protein coding gene |
| Scaffold | PnScaf1639 |
| Start | 23724 |
| End | 25908 |
| Direction | + |
Sequence
Transcript: 2055 (bp)
ATGGAGCAAAAAATAAAAGAAATAGATCGAAGACTTGAAGATGTTGATGAAGAGATTGCAAAATTGCAACAGGTTAGAAGAAAACTAAAACTGCAACGAGACAAACTCATAGATAAGTCAGATTTTGAGAAATCTGAAGCTGATGCGAAAAAAACTATATGGAATGATGAATCGTTTCCATGGTCGACAATGGTGAGAGATAAATTAAGAAATGTTTTTGGGATGGATGATTTCAGAAGTCAACAGCTGGAGACAATAAATGTTACCATGTCCAAGAAAGACTGCATTCTGGTTTCTCCAACTGGTGGAGGAAAAAGTTTAACATACCAATTACCATCATTGTGTGAGTCAGGAATTACACTCGTAGTTTCACCTTTAATCTCCCTCATAGAGGATCAAATCTATTCCCTCGAAAAGAAGATGGTTCCGGCGGAAATGCTCTCTTCCCACAGCCCGAAGGAGCAAGTCAAACACGTCCATTCTGTGTTGGAAGATCCAAGTCACTCGACCGGAAAGCAAATGAAAATACTGTTTGTTACTCCCGAGAGATTAAGTAAGAGCAAAACACTCATGAAATCATTGCAGAAGTGCTACGTTAACAAGAAATTAGAAAGAATCGCCATTGACGAAGTGCATTGTTGTTCACTTCTCGGTCACGACTATCGACCGGACTACAAGTATCTCGGAACAATGAAGACGCTCTTCCCAGATGTGCCGATCTTAGGCGTAACTGCAACGTGTTCTAAGAAAATTCTAATGGATGTGCAAAAGCTCTTAAATATAAGACGGTGCATCGTCTTTCAATCTCCCTTCAATCGTCCAAATCTTTACTACCACGTAATGGAAAAGCCAAGCGAAAATGAAGAAGTTTATAACTTACTTGCGAACCTCTTGCTTAAACGTTATGCGGGTCAAAATGGAATAATTTACACGTTCACAATCAAAGACACAGAAACGCTTACAAGTGAACTTCTTCAAAGAGATTGCAAAGTGCGGCCATATCATGCCCAATTGGAGCAAGCACAGCGGACAAAGATTTACAAGCAATGGATAAAGGGCGAAATTCAGGCTGTGTGCGCAACAATCGCATTCGGTCTTGGGATAGACAATCAGAAAACACGCTTTGTTATTCATCACACCATGTCGAAGTCAATGGAAAATTTTTATCAAGAAAGCGGCAGATGTGGCCGTGATGGAGAGTACGCCGAATGTGTTCTGCTTTATCGCCTGGCAGATATGCAAAAAATTTCTACACTCACCTTCACCGAAGTTAACGGTCTCGCCAATGCATACTCTGTCATCAATTACGCAATCAGTTCTAAGATTTGTCGACGAGATTTGTTTTCGAAATATTTTACAGAAGTGTGGAATGAAGAAAGTTGCGGGAAAATGTGCGATTGTTGCTTTTATAAGGAATCCAATCGACTAGCAGCACCGGCGAATGTCAACATAATATCGCACTACCAGACAATTCTCAAAATTCTTCAAAATGCCTCAGCTTCAGAAACTAAGATGACAGCACTGAAAATTATGGACGCGTGGTTCCTGAAAGGTCCGAAAAATTTGCGAATGGAATCTGCTCCAGTTATCGACCGTTCGTATGCAGAACAAATTCTGGCATTCCTTGTCATCAATGACTATTTAAAAGAGGATTTCCATTACACTGCATATAGCACGCTGTCCTACATCATTAAAGGTCCACGTGTTCCGGAGGATAATGAAATCGATTTTCAACCCGCTCGCGCCTGTGATTTGCCAAACGTTGAAGAGCTCAAAAGATTTTATGAAGTAACGTCAAAGAAGTCAAAGCAAAACGATGACCATAACAGAACCCTTCCAATTTCATTGTCACCGTGCAACAAAAAACGTAAGATTAGCGAGAAAATTGTGGTTAGTAGTTCAAGCCTCGAGAGGATAATCAATAGCAAAATCAAAGAAGCGTTGTCACAAAGTATTGTAAAAACATCTTCGCAAAGTGACTCGGACGACGACGACGATGACGACGTTTTTATCGTTGAACCGAAAAAAGAGAAAGAAGTCATCGAGCTCGATGAT
Protein: 685 (aa)
MEQKIKEIDRRLEDVDEEIAKLQQVRRKLKLQRDKLIDKSDFEKSEADAKKTIWNDESFPWSTMVRDKLRNVFGMDDFRSQQLETINVTMSKKDCILVSPTGGGKSLTYQLPSLCESGITLVVSPLISLIEDQIYSLEKKMVPAEMLSSHSPKEQVKHVHSVLEDPSHSTGKQMKILFVTPERLSKSKTLMKSLQKCYVNKKLERIAIDEVHCCSLLGHDYRPDYKYLGTMKTLFPDVPILGVTATCSKKILMDVQKLLNIRRCIVFQSPFNRPNLYYHVMEKPSENEEVYNLLANLLLKRYAGQNGIIYTFTIKDTETLTSELLQRDCKVRPYHAQLEQAQRTKIYKQWIKGEIQAVCATIAFGLGIDNQKTRFVIHHTMSKSMENFYQESGRCGRDGEYAECVLLYRLADMQKISTLTFTEVNGLANAYSVINYAISSKICRRDLFSKYFTEVWNEESCGKMCDCCFYKESNRLAAPANVNIISHYQTILKILQNASASETKMTALKIMDAWFLKGPKNLRMESAPVIDRSYAEQILAFLVINDYLKEDFHYTAYSTLSYIIKGPRVPEDNEIDFQPARACDLPNVEELKRFYEVTSKKSKQNDDHNRTLPISLSPCNKKRKISEKIVVSSSSLERIINSKIKEALSQSIVKTSSQSDSDDDDDDDVFIVEPKKEKEVIELDD
| Type | Start | End | Length |
| CDS |
23724 |
23892 |
169 |
| CDS |
23950 |
24394 |
445 |
| CDS |
24465 |
25905 |
1441 |
| intron |
23893 |
23949 |
57 |
| intron |
24395 |
24464 |
70 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001867566 |
ATP-dependent DNA helicase Q1 [Culex quinquefasciatus] gb|EDS45279.1| ATP-dependent DNA helicase Q1 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR011545 |
DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
|
| InterPro |
IPR004589 |
DNA helicase, ATP-dependent, RecQ type |
|
| InterPro |
IPR014001 |
Helicase, superfamily 1/2, ATP-binding domain |
|
| InterPro |
IPR001650 |
Helicase, C-terminal |
|
| Gene Ontology(BP) |
GO:0006310 |
DNA recombination |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0004386 |
helicase activity |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Gene Ontology(MF) |
GO:0008026 |
ATP-dependent helicase activity |
|
| Pfam |
PF01202.17 |
Shikimate kinase |
0.077 |
| Pfam |
PF09278.6 |
MerR, DNA binding |
0.37 |
| Pfam |
PF08946.5 |
Osmosensory transporter coiled coil |
0.61 |
| Pfam |
PF00270.24 |
DEAD/DEAH box helicase |
7.3e-15 |
| Pfam |
PF00271.26 |
Helicase conserved C-terminal domain |
1.1e-15 |
| Pfam |
PF04851.10 |
Type III restriction enzyme, res subunit |
3e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL000017-PA |
| N. vitripennis |
NV16610-PA |
| H. sapiens |
ENSP00000416739 |
| A. mellifera |
GB16722-PA |
| P. vanderplanki |
Pv.17587 |
| S. invicta |
SI2.2.0_80478 |
| A. aegypti |
AAEL007256 |
| D. plexippus |
DPOGS200364PA |
| B. mori |
BGIBMGA005666-TA |
| T. castaneum |
TC004664 |
| P. humanus |
PHUM537310-PA |
| H. sapiens |
ENSP00000395449 |
| C. quinquefasciatus |
CPIJ017275 |