MidgeBase gene description page [Pn.01843]
Outline
| Gene ID | Pn.01843 |
| Type | Protein coding gene |
| Scaffold | PnScaf1634 |
| Start | 18661 |
| End | 27157 |
| Direction | - |
Sequence
Transcript: 654 (bp)
ATGAGAGATTCACTCGACAATTGTTGTGACGACGACTACGATGATGATGATGATGCACAACTTTTGATTCCTAAAATCATGATTAATGCAATTCTTGTCTTCAACAATTATGGAAAACCACGTCTCACAAAGTTCTATCAGTATTTTACGGTTGAAGAACAGCAGCAAATCATAAGCGAAACTTTTCAACTCCTCTCAAAGCGTGACGATCAAACATGTAACTTTCTCGAGCTCCCTTCAACATCAATGTTCTGCATTCGGTCACCTGAAAGCTTCAAGCTGATTTACAGACATTACGCTACTCTCTATTTCGTTTTTTGTGTAGACTCAGCGGAATCGGAACTCGGAATACTTGATCTAATCCAAGTTTTTGTCGAGTCGCTCGATCGCTCTTTTTCGAACGTTTGTGAATTGGACCTGATCTTCAATAGTGACTCAATCAACTATCTTCTCGACGAAATTGTACAATCAGGAATGGTGCTCGAGACTAATATTAATAGTATCATAACGAAATTTGAAGAACAAAATCGAATTGCCAAGGTTGAGACTTCGCCCGCGTCGGTTAAAGCGACCTCCGCTGTCTCAGCGATAAAAAATATAAATCTGCCTCAGTTAAAAGAAAAAGTAAAAGATCTGCCAAATTCATTCAAATTT
Protein: 218 (aa)
MRDSLDNCCDDDYDDDDDAQLLIPKIMINAILVFNNYGKPRLTKFYQYFTVEEQQQIISETFQLLSKRDDQTCNFLELPSTSMFCIRSPESFKLIYRHYATLYFVFCVDSAESELGILDLIQVFVESLDRSFSNVCELDLIFNSDSINYLLDEIVQSGMVLETNINSIITKFEEQNRIAKVETSPASVKATSAVSAIKNINLPQLKEKVKDLPNSFKF
| Type | Start | End | Length |
| CDS |
18664 |
19004 |
341 |
| CDS |
19064 |
19229 |
166 |
| CDS |
19313 |
19404 |
92 |
| CDS |
27103 |
27157 |
55 |
| intron |
19005 |
19063 |
59 |
| intron |
19230 |
19312 |
83 |
| intron |
19405 |
27102 |
7698 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_001155597 |
AP-3 complex subunit sigma-like [Acyrthosiphon pisum] ref|XP_003248915.1| PREDICTED: AP-3 complex subunit sigma-1-like [Acyrthosiphon pisum] dbj|BAH72821.1| ACYPI004966 [Acyrthosiphon pisum] |
2e-62 |
| InterPro |
IPR016635 |
Adaptor protein complex, sigma subunit |
|
| InterPro |
IPR000804 |
Clathrin adaptor complex, small chain |
|
| InterPro |
IPR022775 |
AP complex, mu/sigma subunit |
|
| InterPro |
IPR011012 |
Longin-like domain |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(BP) |
GO:0015031 |
protein transport |
|
| Gene Ontology(BP) |
GO:0016192 |
vesicle-mediated transport |
|
| Gene Ontology(CC) |
GO:0030117 |
membrane coat |
|
| Gene Ontology(MF) |
GO:0008565 |
protein transporter activity |
|
| Pfam |
PF01217.15 |
Clathrin adaptor complex small chain |
1.8e-45 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.16454 |