MidgeBase gene description page [Pn.01822]
Outline
| Gene ID | Pn.01822 |
| Type | Protein coding gene |
| Scaffold | PnScaf1610 |
| Start | 1686 |
| End | 7247 |
| Direction | - |
Sequence
Transcript: 2781 (bp)
ATGCAGGGGAAAAATTTTCTCGCGCGACTGATCGAGTTTATGGTGTTGCTGTCGTTCGGCTACGCCTACAAGCCGGTCGTGCTGTTTCATGGAATCCTTTCGGACGCCACCAGTATGCTGCTCATTGCTGAACGAATAAAATTGCATCACCCGGGCACAGAGGTGTACCTCGTCGACAAGTTCAACAATTGGGGGAGTCTCGAGCACGCCCTCGGTCAGATCGACTCGTTTTTCGAAGACTTTGAGGACATTTTCCGAAGGCACCCGGACGGCGTGCACGTGTTGGGCTACTCGCAGGGCGGACTGCTCGCGCGAGCGCTCATTCAGTTCTACACGAACCACAACGTCAAGAAGTTCATATCGCTGAGCAGTCCCCAAGCCGGCCAGTTCGGATATATCGCCGCGATAGTCGACGATTTTATCGGACAGGTTTTTGTTCCGCATCGCCTGCGCTTCGATTTCATCGTTTATGGAAGTTTGAGTCAGCACTCGAGCGAAATAATTGATGAGATTGGAAGGCGAGGTGCGGGGCAGTACGCAAGTGTGGTTCGCGTCATAGAGCATCCCAAAAACGTCTCGCACGAGCTCACACAGTCGGCTGTCTTAATTTTCGAGAATGTCGCCGGCTTTAAGCTTTTTTATGGGAAGACGAGGCTGACAAACAGCCACCCAAAGCCACTCAAATTTCTCGTCCACATCGAGGGCCTGCAAGTAACCGAGCCGAGGAGAAGCTTCCGCCCGCCACTCACGATGGTCGAGCATCAGGGAGATTTTCTCGAGATGGCCTTCTTCATCATGGAGGGAAGTGAAAATCTCGTCTTCCTCACCGGTTTCGAGTGGTTTGATGTGCTTCGATGTGATCGACCCTTTGGTAAGACCTACGCGACCTTCAACACCTCAAACCGCAAATGGCTGGGAAGGAAGTTCGACGTAGGTAATGCTTGTCATCAATTCGCCGGCGACGAAAACTACTGCAATAATTTTCGTTCGAAAAACGACCAAGAAGATAGTCAGAAGTCAGTCCCGAGCAACCAACGGAAGCTAATGCATGCTCAAAGCAAGCTCACGGCGTGCAATAGCCACACGTTGGGCTATCATTTTCTGCCGCCGGTGGTCATTGCAGGCAGCAGATTCAGGAACTTTCACGGCTGCCCGCTCGCCTTTGGCGACATCGTTGACTACAGCAGTCTCGTGTTCCGCGGCCTCGACTACGGCAAGTACTACAGCATGTTCGACGACCTCATTTTCGCGATGAGCCAGCGAGGCAACTTCTCGGTCATCAACGTGCCCTACGAACGCGACGGCGCCGGTTTTGTGAGACGCAGAAGCAGGCTCAGAATCGAGGCGCACGCGATCTTGCGCTTGCGAACGCCGAGCGTCGCAAACGACACCGACCACATCACGTCGACGTTCGTCAACACCGGATACTTGCTGGCGTTGACGCCGGGCGCGCCTTACAGCGCCTTCGAGAAGCTCACGCTTCCCTTCGACCCCGTCACCTGGTGTCTCCTGCTAGGAACGTTCGCGATCGCCTTTGCCGTCGTGTTCGTGCTCAACAAGATGCCGCGACGCGTGCAGGACGTCGTTTTCGGCAAAAGCGTGCGGCTATCGACTCTCAACATCGTGCGGCACTTTTTCGGCGACGGCCAGACCTCGGTTCCGGCAAAGTCCTCGCCTCGCTTCATTCTCGTCATGTTCATCATTTTTTGTCTGATTTTTCGGACGGCCTACGAGGGCGTGCTCTTCGAGATGCTCACGACTGAGATGCGAAAGCCGCTGCCGAAAACACTCGACGAGGCCGTCGAAGAAAACTTTACCTTTGTGGCTGTCGATGCCTCCCAAAGCGATTCTATGCTGCCGGTTAGCTCAGACCTAATAGAACTCCTCGAGGTTGACGACTTTCATGTGGAGTTTCTCACGCAGATCAGAAACTTTTCGGCGAGGAAGGCCTTTGTGCTGGAAAGACGCTACTACGACGAGCAGAGGCTGCGACGCGGCATCGACTGCGAGGTCCTCGCGCACAAGCTCTTCTCGCACTCGACCGGCATCGGAATGCCGCGCAATCATTTTCTCTACGAGCTGACCGAGGACACGCTCAGGCGCCTCATTCCGGCCGGAATCCCGCAGCACGCCGTCCACTTCAACGAGTGGCTGAGCAACCACCACGTTGAGCCGCAGGACGAGTCAGCGCCCGCCCTAATGTCCCTCGACGACCTCGACTTTGCCTTTCTCATCTACCTGATTTTTTGTTTCGCTTCGGGTGCCGCCTTTGCGCTTGAATGCTTGTGGTCAGCACTGAGGGCTGACGTGCCCGCGTTTCTGCATCTCATCTTTCCCACGCTCGTCGCCAACAACGCCTACGAGCTTTTTTACTCGCGAATCGGACAACGCACATCGGTCGGCAACTACTGGAACGACCCGCACCAGCGACAACTCTACCTCAAGTACAGCAACTTCTTGCCCTACGTGAACAACGAGTTGCTGTGCGAAAATAGCACGCAATTTCGCGAGAATTTGCTGAGGCTCGAAAAGATGATTCTCATCGGCGGACCGGATGATGACGTGATAACGCCTTGGGAGAGCGCACACTTTGGCTTTTACGACCAGAATCTGACGGTGGTTCCACTCCGCGATCGGCCATTTTACGCAAACGACGCCATCGGACTGAAGACACTCGATGAGCAGAAGAAGCTCGAGCTGGTGACAGTTCCGCACATCATTCACATCGCATGGCACATTAACGTGACGCTCATCGATCAAGAAATCGTTCCGCGACTAGAC
Protein: 927 (aa)
MQGKNFLARLIEFMVLLSFGYAYKPVVLFHGILSDATSMLLIAERIKLHHPGTEVYLVDKFNNWGSLEHALGQIDSFFEDFEDIFRRHPDGVHVLGYSQGGLLARALIQFYTNHNVKKFISLSSPQAGQFGYIAAIVDDFIGQVFVPHRLRFDFIVYGSLSQHSSEIIDEIGRRGAGQYASVVRVIEHPKNVSHELTQSAVLIFENVAGFKLFYGKTRLTNSHPKPLKFLVHIEGLQVTEPRRSFRPPLTMVEHQGDFLEMAFFIMEGSENLVFLTGFEWFDVLRCDRPFGKTYATFNTSNRKWLGRKFDVGNACHQFAGDENYCNNFRSKNDQEDSQKSVPSNQRKLMHAQSKLTACNSHTLGYHFLPPVVIAGSRFRNFHGCPLAFGDIVDYSSLVFRGLDYGKYYSMFDDLIFAMSQRGNFSVINVPYERDGAGFVRRRSRLRIEAHAILRLRTPSVANDTDHITSTFVNTGYLLALTPGAPYSAFEKLTLPFDPVTWCLLLGTFAIAFAVVFVLNKMPRRVQDVVFGKSVRLSTLNIVRHFFGDGQTSVPAKSSPRFILVMFIIFCLIFRTAYEGVLFEMLTTEMRKPLPKTLDEAVEENFTFVAVDASQSDSMLPVSSDLIELLEVDDFHVEFLTQIRNFSARKAFVLERRYYDEQRLRRGIDCEVLAHKLFSHSTGIGMPRNHFLYELTEDTLRRLIPAGIPQHAVHFNEWLSNHHVEPQDESAPALMSLDDLDFAFLIYLIFCFASGAAFALECLWSALRADVPAFLHLIFPTLVANNAYELFYSRIGQRTSVGNYWNDPHQRQLYLKYSNFLPYVNNELLCENSTQFRENLLRLEKMILIGGPDDDVITPWESAHFGFYDQNLTVVPLRDRPFYANDAIGLKTLDEQKKLELVTVPHIIHIAWHINVTLIDQEIVPRLD
| Type | Start | End | Length |
| CDS |
1689 |
1906 |
218 |
| CDS |
2421 |
2672 |
252 |
| CDS |
2781 |
3226 |
446 |
| CDS |
3964 |
4734 |
771 |
| CDS |
4976 |
5675 |
700 |
| CDS |
5844 |
6093 |
250 |
| CDS |
7104 |
7247 |
144 |
| intron |
1907 |
2420 |
514 |
| intron |
2673 |
2780 |
108 |
| intron |
3227 |
3963 |
737 |
| intron |
4735 |
4975 |
241 |
| intron |
5676 |
5843 |
168 |
| intron |
6094 |
7103 |
1010 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_001153389 |
palmitoyl-protein thioesterase 2 precursor [Nasonia vitripennis] |
1e-55 |
| InterPro |
IPR002472 |
Palmitoyl protein thioesterase |
|
| Gene Ontology(BP) |
GO:0006464 |
protein modification process |
|
| Gene Ontology(MF) |
GO:0008474 |
palmitoyl-(protein) hydrolase activity |
|
| Pfam |
PF00561.15 |
alpha/beta hydrolase fold |
2.6e-05 |
| Pfam |
PF07819.8 |
PGAP1-like protein |
0.0014 |
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
0.0014 |
| Pfam |
PF05057.9 |
Putative serine esterase (DUF676) |
1.5e-05 |
| Pfam |
PF02089.10 |
Palmitoyl protein thioesterase |
1e-16 |
| Pfam |
PF12695.2 |
Alpha/beta hydrolase family |
2.6e-05 |
| Pfam |
PF12697.2 |
Alpha/beta hydrolase family |
6.2e-08 |
| Pfam |
PF03959.8 |
Serine hydrolase (FSH1) |
0.1 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000416062 |
| H. sapiens |
ENSP00000447950 |
| H. sapiens |
ENSP00000382568 |
| H. sapiens |
ENSP00000389930 |
| H. sapiens |
ENSP00000406566 |
| H. sapiens |
ENSP00000448311 |
| H. sapiens |
ENSP00000392885 |
| B. mori |
BGIBMGA006016-TA |
| H. sapiens |
ENSP00000320528 |
| H. sapiens |
ENSP00000448456 |
| H. melpomene |
HMEL002584-PA |
| H. sapiens |
ENSP00000433262 |
| H. sapiens |
ENSP00000447998 |
| H. sapiens |
ENSP00000412827 |
| H. sapiens |
ENSP00000397037 |
| H. sapiens |
ENSP00000411625 |
| H. sapiens |
ENSP00000408703 |
| H. sapiens |
ENSP00000432308 |
| A. gambiae |
AGAP009695 |
| H. sapiens |
ENSP00000433696 |
| H. sapiens |
ENSP00000436963 |
| H. sapiens |
ENSP00000364285 |
| H. sapiens |
ENSP00000448072 |
| H. sapiens |
ENSP00000447926 |
| H. sapiens |
ENSP00000447973 |
| S. invicta |
SI2.2.0_00950 |
| H. sapiens |
ENSP00000447169 |
| H. sapiens |
ENSP00000393629 |
| A. mellifera |
GB11628-PA |
| H. sapiens |
ENSP00000435258 |
| H. sapiens |
ENSP00000416505 |
| H. sapiens |
ENSP00000448443 |
| A. aegypti |
AAEL001235 |
| H. sapiens |
ENSP00000354608 |
| T. castaneum |
TC012908 |
| H. sapiens |
ENSP00000395242 |
| H. sapiens |
ENSP00000399879 |
| H. sapiens |
ENSP00000433061 |
| H. sapiens |
ENSP00000455087 |
| P. vanderplanki |
Pv.05079 |
| H. sapiens |
ENSP00000434992 |
| H. sapiens |
ENSP00000382749 |
| P. humanus |
PHUM164350-PA |
| H. sapiens |
ENSP00000431928 |
| H. sapiens |
ENSP00000448392 |
| H. sapiens |
ENSP00000433323 |
| H. sapiens |
ENSP00000382570 |
| H. sapiens |
ENSP00000388341 |
| H. sapiens |
ENSP00000403820 |
| H. sapiens |
ENSP00000364279 |
| H. sapiens |
ENSP00000411007 |
| H. sapiens |
ENSP00000448120 |
| H. sapiens |
ENSP00000382750 |
| D. melanogaster |
FBgn0032358 |
| H. sapiens |
ENSP00000406219 |
| H. sapiens |
ENSP00000449114 |
| M. musculus |
ENSMUSG00000015474 |
| H. sapiens |
ENSP00000412381 |
| D. plexippus |
DPOGS211831PA |
| H. sapiens |
ENSP00000454948 |
| H. sapiens |
ENSP00000392744 |
| H. sapiens |
ENSP00000382573 |
| H. sapiens |
ENSP00000457534 |
| H. sapiens |
ENSP00000448877 |
| H. sapiens |
ENSP00000372789 |
| H. sapiens |
ENSP00000432964 |
| H. sapiens |
ENSP00000378894 |
| H. sapiens |
ENSP00000372637 |
| H. sapiens |
ENSP00000432502 |
| H. sapiens |
ENSP00000456236 |
| H. sapiens |
ENSP00000398462 |
| H. sapiens |
ENSP00000406496 |
| C. quinquefasciatus |
CPIJ002498 |
| H. sapiens |
ENSP00000382748 |