MidgeBase gene description page [Pn.01807]
Outline
| Gene ID | Pn.01807 |
| Type | Protein coding gene |
| Scaffold | PnScaf1595 |
| Start | 34801 |
| End | 35819 |
| Direction | + |
Sequence
Transcript: 954 (bp)
ATGTGTGACATAAACGAGGCATTAATCAAGAAGGAAACTATTTATGCTGGTACAGTATACATTCCTTTGACGGCGGGTACCAAAGTAAAGTTTCATTATGAGACGAAACGAGCGGACAACCAGAAAATAATTGACGATTCTAGAAAGAAAGATCACAAACCGATGGAGCTTGTTCTTGGCAAAAAGTTCAAACTCGAAGTATGGGAAGTAATTGTACAGAAAATGTCCTTAAATGAGGTAGCAAAATTCACCGTAGATAAATCGCTGGTGCAACAATACCCGTTCATCGCAAAGACCATTCGAGATGCTTTCAAACATCCAGAAGAAAGAAAACACTGCTGCGGAATGACTCTGAACACGGAAGGTCTCGGCTACGCTGACCTAGATGACCTATTTAAAAACCCCTGCGACTTGATTTTCACAATAGAAATTCTCTCTATTGAGCGTCCCGAAGAGTATGAAAAGGAATCGTGGCAGTTGAACGAGCAAGAGAAGTTGACGTCGGTGGAGGAGCACAGACTAAAAGGAAATGAATTTTTCAAAAACAACCAGTTTACTGAGGCAGAAGAGTCGTACTCGAAAGCGCTGGGCATTTTGGAGCAACTCATGCTGCGTGAAAAACCAAAGGACGTCGAATGGATGGAGCTAGCGAAACTGAAGACACCACTTTTGCTTAACTTCTCACAGTGCAAGCTATTGCAAAAGGATTACTATCGAGCTATTGAGTGCTGCACTGAGGTTCTGTCGTACGACCCCGATAACTTGAAAGCACTTTATCGCCGGGGAAAAGGAAACGTTGGCGCATGGAACTCTGAAAAGGCAAAAGAAGACTTTTATCGATGCATCGAGCTTGATCCCTCACTCAAACCGACAATCACCAAAGAAATCAATGCATTGATGGACAAGATTAAGGCACATGAAAACCAAGATAAGTCAAACTATAGAAAATTATTC
Protein: 318 (aa)
MCDINEALIKKETIYAGTVYIPLTAGTKVKFHYETKRADNQKIIDDSRKKDHKPMELVLGKKFKLEVWEVIVQKMSLNEVAKFTVDKSLVQQYPFIAKTIRDAFKHPEERKHCCGMTLNTEGLGYADLDDLFKNPCDLIFTIEILSIERPEEYEKESWQLNEQEKLTSVEEHRLKGNEFFKNNQFTEAEESYSKALGILEQLMLREKPKDVEWMELAKLKTPLLLNFSQCKLLQKDYYRAIECCTEVLSYDPDNLKALYRRGKGNVGAWNSEKAKEDFYRCIELDPSLKPTITKEINALMDKIKAHENQDKSNYRKLF
| Type | Start | End | Length |
| CDS |
34801 |
35265 |
465 |
| CDS |
35328 |
35816 |
489 |
| intron |
35266 |
35327 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_572758 |
CG1847, isoform A [Drosophila melanogaster] gb|AAF48106.1| CG1847, isoform A [Drosophila melanogaster] gb|AAL48489.1| HL02936p [Drosophila melanogaster] gb|ACL84127.1| CG1847-PA [synthetic construct] gb|ACL89232.1| CG1847-PA [synthetic construct] |
1e-107 |
| InterPro |
IPR001440 |
Tetratricopeptide TPR-1 |
|
| InterPro |
IPR011990 |
Tetratricopeptide-like helical |
|
| InterPro |
IPR023114 |
Elongated TPR repeat-containing domain |
|
| InterPro |
IPR013026 |
Tetratricopeptide repeat-containing domain |
|
| InterPro |
IPR019734 |
Tetratricopeptide repeat |
|
| InterPro |
IPR001179 |
Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain |
|
| Gene Ontology(BP) |
GO:0006457 |
protein folding |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF07719.12 |
Tetratricopeptide repeat |
1e-10 |
| Pfam |
PF13176.1 |
Tetratricopeptide repeat |
0.12 |
| Pfam |
PF12895.2 |
Anaphase-promoting complex, cyclosome, subunit 3 |
0.0011 |
| Pfam |
PF13428.1 |
Tetratricopeptide repeat |
0.047 |
| Pfam |
PF13424.1 |
Tetratricopeptide repeat |
0.0012 |
| Pfam |
PF13432.1 |
Tetratricopeptide repeat |
0.0004 |
| Pfam |
PF00515.23 |
Tetratricopeptide repeat |
3e-13 |
| Pfam |
PF13414.1 |
TPR repeat |
2.1e-17 |
| Pfam |
PF13371.1 |
Tetratricopeptide repeat |
0.14 |
| Pfam |
PF10516.4 |
SHNi-TPR |
0.037 |
| Pfam |
PF04212.13 |
MIT (microtubule interacting and transport) domain |
0.045 |
| Pfam |
PF13181.1 |
Tetratricopeptide repeat |
6.8e-08 |
| Pfam |
PF00254.23 |
FKBP-type peptidyl-prolyl cis-trans isomerase |
7.8e-11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP011684 |
| P. vanderplanki |
Pv.02882 |
| P. humanus |
PHUM016580-PA |
| A. aegypti |
AAEL012809 |
| B. mori |
BGIBMGA005285-TA |
| M. musculus |
ENSMUSG00000024847 |
| A. mellifera |
GB16562-PA |
| A. aegypti |
AAEL009021 |
| S. invicta |
SI2.2.0_11301 |
| T. castaneum |
TC002337 |
| H. sapiens |
ENSP00000279146 |
| D. plexippus |
DPOGS207722PA |
| H. melpomene |
HMEL015311-PA |
| A. gambiae |
AGAP000725 |
| D. melanogaster |
FBgn0030345 |
| C. quinquefasciatus |
CPIJ018866 |
| N. vitripennis |
NV13123-PA |