MidgeBase gene description page [Pn.01800]
Outline
| Gene ID | Pn.01800 |
| Type | Protein coding gene |
| Scaffold | PnScaf1595 |
| Start | 18734 |
| End | 20024 |
| Direction | - |
Sequence
Transcript: 975 (bp)
ATGTTCACGATGTTAACACCTGCTTTGTTATGCCATCTAATTTTTGTGATTATCGCGCAATTGTCACAATCCGTGGCGTCGCATCCCGTGACGAGTGAGGACGTGATAGATTTGTCTTCCTTGGGCGCGCGACTTTATGGCTCGCCCAGCAGCGAGGTGAATTTCACGGAGGGGCAGAATCCTGAAGAGCAAGGACCGTACCTTGAGGGCGATCTGCTCGTTCCAATCGCCTCAGCAAAGAACGGCATGCAAAGCGAGTCGCTGAGGTGGAAGAGCGGCGAAGTTCCCTACATCATTCGTGGAAAATTCAGCACAAGCGAGATGAACGTCATCCAGAACGCCTTCAATCAATATCACCGCAGCACTTGCATAAAATTTGTGCCACGTCGCGCCAAGCACGTCGACTACATTGTCATCGAGAATCAGCAGTCGGGGTGCTGGAGTTCGGTGGGGCGAATCGGAGGCGAGCAGAAAGTGAACTTGCAGTCGCCGGGCTGTGTCACAAAGGCAGGAACGGTCGTGCACGAGTTGCTTCATGTGCTCGGTTTTCTGCACGAGCAGAATCGCGAGGAGCGCGATCAATTTGTGTGGATAATTGAAAAGAACATTCGTGCGGGCTACGAGGTGAATTTCAAGAAGGCATCGCCCGGCGAGACGAGCGGTTTCGGCGTCGGCTACGATTACGGCAGCGTCATGCATTATTCAGCGAAGGCCTTCTCCCAAAATGGCCAGCCGACAATCGAGGCGAAGACGCGAACGAGCGAGAAGATGGGACAGCGCGAGGGCTTCTCCAAAAAGGACATCGAAAAGGTGAACAAAATGTACAAGTGCCAGAAGACAACGGCCGACGCCGATCCGTCCATTATGACGTCGACCATCGGACCGCCATCGAGCGAGTCGTCGCTCTTCGAAAACATCCTCGGCATCTTCTTTCCCAGCTCCAACATGGACGAGGAGGAAATGTTGACGGGCGAA
Protein: 325 (aa)
MFTMLTPALLCHLIFVIIAQLSQSVASHPVTSEDVIDLSSLGARLYGSPSSEVNFTEGQNPEEQGPYLEGDLLVPIASAKNGMQSESLRWKSGEVPYIIRGKFSTSEMNVIQNAFNQYHRSTCIKFVPRRAKHVDYIVIENQQSGCWSSVGRIGGEQKVNLQSPGCVTKAGTVVHELLHVLGFLHEQNREERDQFVWIIEKNIRAGYEVNFKKASPGETSGFGVGYDYGSVMHYSAKAFSQNGQPTIEAKTRTSEKMGQREGFSKKDIEKVNKMYKCQKTTADADPSIMTSTIGPPSSESSLFENILGIFFPSSNMDEEEMLTGE
| Type | Start | End | Length |
| CDS |
18737 |
19401 |
665 |
| CDS |
19715 |
20024 |
310 |
| intron |
19402 |
19714 |
313 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001999174 |
GI24365 [Drosophila mojavensis] gb|EDW14635.1| GI24365 [Drosophila mojavensis] |
7e-79 |
| InterPro |
IPR024079 |
Metallopeptidase, catalytic domain |
|
| InterPro |
IPR001506 |
Peptidase M12A, astacin |
|
| InterPro |
IPR006026 |
Peptidase, metallopeptidase |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0008237 |
metallopeptidase activity |
|
| Gene Ontology(MF) |
GO:0004222 |
metalloendopeptidase activity |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF05548.6 |
Gametolysin peptidase M11 |
0.014 |
| Pfam |
PF00413.19 |
Matrixin |
0.1 |
| Pfam |
PF01400.19 |
Astacin (Peptidase family M12A) |
2.8e-65 |
| Pfam |
PF13720.1 |
Udp N-acetylglucosamine O-acyltransferase |
0.047 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0039069 |
| B. mori |
BGIBMGA013174-TA |
| P. humanus |
PHUM009860-PA |
| D. plexippus |
DPOGS212727PA |
| A. gambiae |
AGAP004620 |
| N. vitripennis |
NV12552-PA |
| S. invicta |
SI2.2.0_80844 |
| A. mellifera |
GB10681-PA |
| C. quinquefasciatus |
CPIJ008659 |
| T. castaneum |
TC015200 |
| A. aegypti |
AAEL003834 |
| H. melpomene |
HMEL008323-PA |
| P. vanderplanki |
Pv.04283 |