MidgeBase gene description page [Pn.01752]
Outline
| Gene ID | Pn.01752 |
| Type | Protein coding gene |
| Scaffold | PnScaf1573 |
| Start | 2964 |
| End | 4482 |
| Direction | + |
Sequence
Transcript: 1458 (bp)
ATGCCGCGAGTTACGAGAAATTCAAAAATTAGTGAATCGATTAAGACTGAGATCGAAAAACCAAAGAAATCGCTGAGAAAACGTAAAGTCTCAACGGAAACCATCACAACAAATTCGTCCTCAAATTCTTCGTCACCGAGCAAAGTTTCTCGAGAATCTAGCTCGATGAGCCCAGTTTCAGACAGCTTTTCGCAGCTAAATGTCTCGGAGAAAACACAGGCAAATAGCTTTCGATCAGCCCGTCGAGCTTTAGCCGACAATGCGAATTTCAAACTTCCGGGTCGTGAAAAGCAGTTTGACGAATTAACTGAGTTTCTAAATGAAGTCATCAATACAAAGTCATCAGCAAGTCTCTACATTAACGGACCACCAGGAACCGGAAAGACGGCAACATTGATGAAAATTGTCAATACCAAGGAGTACGAGGAAAAACTGAAAATTGCATTCATCAATTCGACCAGCATTAGTTCAATTGGGGCAATTTACAAGAAAATATGCATGGAACTTAATCTCAAGGTATCTGTTAATGGAAGTGAGAAGGAATGTTTAGCTGCAGTAGAGAAATATTTCAAGACAAACCACTCGAAAACGACTCTTCTCGTGCTGGACGAGATCGATCAGCTGTGTTCGGGCAAAAATCAGAACGTTTTGTACCATATCTTCGAGTGGCCAATGATCCGTAATTCAAAACTCATCCTCATTGGCATTGCCAACTCCCTCGATTTAACTGACCGACTGCTAGTCAGACTCCAAGCGCACTGCGAGTTGAAGCCGAAAGTCATGCATTTTCCTGCTTACACAAAGGCTGAAATTGTAGAAATATTTAAGTCACGACTGGAAGAGAGTGATCTTTTCCCACCAGTCGCCATTCAACTGCTTGCTGCAAAAGTTTCGGCGGTCTCGGGTGACATAAGGCGCGCTTTGAACATCGGGAAGAGAGTCATTGAACTTGCCGAGTTGGAGAAGAAGAGAAGTGACAAGGAACTAGACCTGAAGCAACTCGATGAGATTATGACTGATTCGACTGAGCTGAAACCTGTAGTTGCAGCCCCAAAGGTTCAAATGAAGGAAGTCATGTCTGTTTTAAATAACGTCTATGGATGTTCGCAGGCGTTGGGCGATGACGTTGACGACTCTTTTCCTTTGCAACAAAAGATTCTCATCTGCACAATGCTGTTGATAATCAAGAACGCCAAAAACAAGGACATCACAATCGGCCGTTTGCACGATGTGTACAAGAGAGTTTGTAAGAATCGCAACATCAATGCTACGGATCTCTCTGAATTTGTCAACCTTTGCTTGTTGGTCGAAACGAAAGGAATAATGAGGCTCGTCAAGAAGAAAGAACCGCGCTTTCACAAGGTTCATCTGCAATGGAACGAGGACGAGGTGTATTCTGCGCTAAAAGACAAACAGATGATCACAAACATTCTCAACGAGCAATCAATTTTGGACCGT
Protein: 486 (aa)
MPRVTRNSKISESIKTEIEKPKKSLRKRKVSTETITTNSSSNSSSPSKVSRESSSMSPVSDSFSQLNVSEKTQANSFRSARRALADNANFKLPGREKQFDELTEFLNEVINTKSSASLYINGPPGTGKTATLMKIVNTKEYEEKLKIAFINSTSISSIGAIYKKICMELNLKVSVNGSEKECLAAVEKYFKTNHSKTTLLVLDEIDQLCSGKNQNVLYHIFEWPMIRNSKLILIGIANSLDLTDRLLVRLQAHCELKPKVMHFPAYTKAEIVEIFKSRLEESDLFPPVAIQLLAAKVSAVSGDIRRALNIGKRVIELAELEKKRSDKELDLKQLDEIMTDSTELKPVVAAPKVQMKEVMSVLNNVYGCSQALGDDVDDSFPLQQKILICTMLLIIKNAKNKDITIGRLHDVYKRVCKNRNINATDLSEFVNLCLLVETKGIMRLVKKKEPRFHKVHLQWNEDEVYSALKDKQMITNILNEQSILDR
| Type | Start | End | Length |
| CDS |
2964 |
3336 |
373 |
| CDS |
3395 |
4479 |
1085 |
| intron |
3337 |
3394 |
58 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001956894 |
GF10154 [Drosophila ananassae] gb|ABI31805.1| Cdc6 [Drosophila ananassae] gb|EDV39700.1| GF10154 [Drosophila ananassae] |
1e-129 |
| InterPro |
IPR011991 |
Winged helix-turn-helix transcription repressor DNA-binding |
|
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR015163 |
CDC6, C-terminal domain |
|
| InterPro |
IPR016314 |
Cell division protein Cdc6 |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Pfam |
PF05729.7 |
NACHT domain |
0.00026 |
| Pfam |
PF05970.9 |
PIF1-like helicase |
0.00022 |
| Pfam |
PF13245.1 |
Part of AAA domain |
6.4e-05 |
| Pfam |
PF05673.8 |
Protein of unknown function (DUF815) |
0.011 |
| Pfam |
PF13401.1 |
AAA domain |
1.7e-15 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
3.8e-09 |
| Pfam |
PF13604.1 |
AAA domain |
0.033 |
| Pfam |
PF01637.13 |
Archaeal ATPase |
1.4e-05 |
| Pfam |
PF09848.4 |
Uncharacterized conserved protein (DUF2075) |
0.00096 |
| Pfam |
PF09079.6 |
CDC6, C terminal |
1.2e-12 |
| Pfam |
PF00931.17 |
NB-ARC domain |
5.1e-07 |
| Pfam |
PF04356.7 |
Protein of unknown function (DUF489) |
0.3 |
| Pfam |
PF00270.24 |
DEAD/DEAH box helicase |
0.0036 |
| Pfam |
PF00158.21 |
Sigma-54 interaction domain |
0.0098 |
| Pfam |
PF00004.24 |
ATPase family associated with various cellular activities (AAA) |
1.8e-13 |
| Pfam |
PF13238.1 |
AAA domain |
0.024 |
| Pfam |
PF13173.1 |
AAA domain |
0.00027 |
| Pfam |
PF03969.11 |
AFG1-like ATPase |
0.074 |
| Pfam |
PF13086.1 |
AAA domain |
0.0028 |
| Pfam |
PF04851.10 |
Type III restriction enzyme, res subunit |
0.011 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA006194-TA |
| H. melpomene |
HMEL016407-PA |
| N. vitripennis |
NV11431-PA |
| P. vanderplanki |
Pv.07590 |
| C. quinquefasciatus |
CPIJ005523 |
| S. invicta |
SI2.2.0_00317 |
| B. mori |
BGIBMGA006195-TA |
| A. aegypti |
AAEL010855 |
| A. mellifera |
GB14936-PA |
| M. musculus |
ENSMUSG00000017499 |
| D. melanogaster |
FBgn0035918 |
| P. humanus |
PHUM395900-PA |
| T. castaneum |
TC013003 |
| A. gambiae |
AGAP005176 |
| D. plexippus |
DPOGS214148PA |
| H. sapiens |
ENSP00000209728 |