MidgeBase gene description page [Pn.01718]
Outline
| Gene ID | Pn.01718 |
| Type | Protein coding gene |
| Scaffold | PnScaf1534 |
| Start | 1022 |
| End | 2714 |
| Direction | + |
Sequence
Transcript: 378 (bp)
ATGCCTCAAACAAGCCACGGTGGCGTAAACCAACTCGGCGGTGTCTTTGTCAACGGCCGTCCCTTGCCCGATGTTGTGAGACAACGAATTGTCGAGCTGGCGCACAATGGCGTTCGTCCTTGCGACATAAGTCGGCAACTGCGCGTCAGTCATGGCTGTGTATCTAAAATACTATCACGTTATTACGAAACGGGGAGCTTTAAGGCGGGCGTGATTGGCGGAAGCAAGCCGAAGGTGGCAACGCCGCCCGTCGTGGACGCCATCGCCAACTACAAGCGCGAAAATCCGACAATGTTCGCGTGGGAGATCCGCGACAGACTTCTGGCCGAGGGCATCTGCTCGCAGGACAATGTGCCGAGCGTGTCGTCCATCAATCGC
Protein: 126 (aa)
MPQTSHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYYETGSFKAGVIGGSKPKVATPPVVDAIANYKRENPTMFAWEIRDRLLAEGICSQDNVPSVSSINR
| Type | Start | End | Length |
| CDS |
1022 |
1034 |
13 |
| CDS |
1191 |
1356 |
166 |
| CDS |
2265 |
2462 |
198 |
| CDS |
2711 |
2711 |
1 |
| intron |
1035 |
1190 |
156 |
| intron |
1357 |
2264 |
908 |
| intron |
2463 |
2710 |
248 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002011429 |
GI14046 [Drosophila mojavensis] gb|EDW10919.1| GI14046 [Drosophila mojavensis] |
2e-68 |
| InterPro |
IPR011991 |
Winged helix-turn-helix transcription repressor DNA-binding |
|
| InterPro |
IPR001523 |
Paired domain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Pfam |
PF13565.1 |
Homeodomain-like domain |
0.0061 |
| Pfam |
PF08069.7 |
Ribosomal S13/S15 N-terminal domain |
0.032 |
| Pfam |
PF00292.13 |
'Paired box' domain |
3.4e-69 |
| Pfam |
PF13384.1 |
Homeodomain-like domain |
2.7e-06 |
| Pfam |
PF13551.1 |
Winged helix-turn helix |
0.00021 |
| Pfam |
PF12759.2 |
InsA C-terminal domain |
0.00043 |
| Pfam |
PF12802.2 |
MarR family |
0.073 |
| Pfam |
PF13518.1 |
Helix-turn-helix domain |
0.077 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.02327 |
| Pn.03918 |
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000355069 |
| A. mellifera |
GB18397-PA |
| H. sapiens |
ENSP00000429637 |
| H. melpomene |
HMEL003749-PA |
| N. vitripennis |
NV16807-PA |
| H. sapiens |
ENSP00000350844 |
| H. sapiens |
ENSP00000452489 |
| P. vanderplanki |
Pv.02183 |
| D. plexippus |
DPOGS214474PA |
| T. castaneum |
TC008672 |
| H. sapiens |
ENSP00000367084 |
| B. mori |
BGIBMGA013359-TA |
| A. gambiae |
AGAP008818 |
| D. plexippus |
DPOGS202358PA |
| P. vanderplanki |
Pv.11094 |
| H. sapiens |
ENSP00000367071 |
| H. sapiens |
ENSP00000430773 |
| A. aegypti |
AAEL002348 |
| H. melpomene |
HMEL002901-PA |
| H. sapiens |
ENSP00000359319 |
| C. quinquefasciatus |
CPIJ006382 |
| D. plexippus |
DPOGS214473PA |
| H. sapiens |
ENSP00000367083 |
| D. melanogaster |
FBgn0003130 |
| T. castaneum |
TC003570 |
| B. mori |
BGIBMGA013358-TA |
| H. sapiens |
ENSP00000367078 |
| S. invicta |
SI2.2.0_00870 |
| M. musculus |
ENSMUSG00000004231 |
| D. melanogaster |
FBgn0005561 |
| M. musculus |
ENSMUSG00000014030 |
| H. sapiens |
ENSP00000429291 |
| H. sapiens |
ENSP00000347385 |
| H. sapiens |
ENSP00000412188 |
| P. humanus |
PHUM596300-PA |
| H. sapiens |
ENSP00000452527 |
| H. sapiens |
ENSP00000398652 |
| H. sapiens |
ENSP00000396259 |
| H. sapiens |
ENSP00000431038 |
| A. gambiae |
AGAP000057 |