MidgeBase gene description page [Pn.01709]
Outline
| Gene ID | Pn.01709 |
| Type | Protein coding gene |
| Scaffold | PnScaf1514 |
| Start | 54814 |
| End | 56048 |
| Direction | + |
Sequence
Transcript: 537 (bp)
ATGTTTACTTCCTTCAACACTGACAAAAACAAGGACATCGAGGAGTTGCTGAGCGACACCGTGTCCGCACAGGATCTCGAAAAAATCGAGAAAGTTTACATGAAGGAGCTGACGGACAAGAAGTTTGTGTCGGCCAAGACGCAGTTCGAGTATGCATGGTGCTTAGTGAGGTCGAAATACGGAGCAGACATAAACAATGGAATCAAGAATTTCGAGGCCCTCTGTAAGGACGATCCAGAGAACAAACGCGACTACATTTACTACATCGCCATCGGCTACATTCGACTCAAGGACCTCCCCACTGCACAGAAATATGTGAAAGCTTTCCTCGAAATCGAACCCAACAACCAACAAGTCAACCTCCTTGACGAGCACATCGAGGCAGAGATGAGAAAGGAGTTCAAAAAAGATGCTGCCATTGCAGGCGGCGCGCTGCTGGTCTTCGGCGGCCTGCTCGGCGTCGGATTTGCTCTTGCGAAAAAACACTATGACAAGAAGAAACAGGAAGAGGAAGTGAAGCAAAATGAATCAAGCAAT
Protein: 179 (aa)
MFTSFNTDKNKDIEELLSDTVSAQDLEKIEKVYMKELTDKKFVSAKTQFEYAWCLVRSKYGADINNGIKNFEALCKDDPENKRDYIYYIAIGYIRLKDLPTAQKYVKAFLEIEPNNQQVNLLDEHIEAEMRKEFKKDAAIAGGALLVFGGLLGVGFALAKKHYDKKKQEEEVKQNESSN
| Type | Start | End | Length |
| CDS |
54814 |
54894 |
81 |
| CDS |
55017 |
55246 |
230 |
| CDS |
55314 |
55371 |
58 |
| CDS |
55448 |
55560 |
113 |
| CDS |
55991 |
56045 |
55 |
| intron |
54895 |
55016 |
122 |
| intron |
55247 |
55313 |
67 |
| intron |
55372 |
55447 |
76 |
| intron |
55561 |
55990 |
430 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001659404 |
hypothetical protein AaeL_AAEL008671 [Aedes aegypti] gb|EAT39534.1| conserved hypothetical protein [Aedes aegypti] |
8e-44 |
| InterPro |
IPR016543 |
Tetratricopeptide repeat 11 Fission 1 protein |
|
| InterPro |
IPR011990 |
Tetratricopeptide-like helical |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF07719.12 |
Tetratricopeptide repeat |
0.019 |
| Pfam |
PF12895.2 |
Anaphase-promoting complex, cyclosome, subunit 3 |
0.025 |
| Pfam |
PF12328.3 |
Rpp20 subunit of nuclear RNase MRP and P |
0.015 |
| Pfam |
PF13428.1 |
Tetratricopeptide repeat |
0.046 |
| Pfam |
PF04926.10 |
Poly(A) polymerase predicted RNA binding domain |
0.024 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.05303 |