MidgeBase gene description page [Pn.01705]
Outline
| Gene ID | Pn.01705 |
| Type | Protein coding gene |
| Scaffold | PnScaf1513 |
| Start | 78493 |
| End | 79726 |
| Direction | - |
Sequence
Transcript: 903 (bp)
ATGCCGTTATGGCGAGGAGAGTTTATTTTTATTGGCGCAATTCTGTTTTTGCTGGAGACACGTGTTAACACTGAAAATTATCATCCAATTTTGCTTTGGCATTCGGCCGGCGAGACATGCTGTGATCGAGAGGGAAAGCTCTACGTCAGCTTCCTTGCGAGGGAAATGGAGAACGTTTACGTTAGGTCAGTGAAAATCGGAAACACGACAGAGGACGATTTCACCAACAGTCTTGTCATGCATCCCTTTCAGCAGATTGACTACGTCTGCAACAAGCTTAAGAACAACGAGCAATTCAAAAACGGTTACAACGCCATCGGACTGTCGCAGGGCGCCCTCTTTCTACGAGGCTTGGCCCAAACCTGTCCATCGCCGCCGATGCTCAATCTCATCTCGTTGGGCGGACCACACCAGGGAGTGTTTCAGTACCCGCGCTGCAATCAAACCCTCGGCCAAGTCAAGTGTCAGCTGCTCAAGCTCAAGCTCAACCTCATCGCCTATCACAGAGTCTTCCAGAACTCGCTGAGTCCATCGACCTACTGGCACGACGACATCAACGAGTTCCGCTACAAGCGCGGCAGCACCTTTCTCGCACTCATAAACAATGAGAACTCTTACAATGCGGATTACATTAAGAATCTGCAGGCACTAAGGCGTTTCGTGCTCGTAAAATACACGAAAGACATCTCCGTGATACCGAATGAGTCAACGCAGTTCGGTTTTTGGGATCGCAACGGAAGGTCAATGAAATTGGAAGAAACGGAGCTGTACACGAAAGACCGACTCGGCCTCAAGCGGATGAAGGAGGACGGGCGACTGATAATGCTCGATGCACCGCTCGAGCACTTGGAGCTCGAGGAGAATTGGTTCAGGGAAAATATTATACCGATTTTGAAAGAGAGA
Protein: 301 (aa)
MPLWRGEFIFIGAILFLLETRVNTENYHPILLWHSAGETCCDREGKLYVSFLAREMENVYVRSVKIGNTTEDDFTNSLVMHPFQQIDYVCNKLKNNEQFKNGYNAIGLSQGALFLRGLAQTCPSPPMLNLISLGGPHQGVFQYPRCNQTLGQVKCQLLKLKLNLIAYHRVFQNSLSPSTYWHDDINEFRYKRGSTFLALINNENSYNADYIKNLQALRRFVLVKYTKDISVIPNESTQFGFWDRNGRSMKLEETELYTKDRLGLKRMKEDGRLIMLDAPLEHLELEENWFRENIIPILKER
| Type | Start | End | Length |
| CDS |
78496 |
78892 |
397 |
| CDS |
78963 |
79124 |
162 |
| CDS |
79184 |
79272 |
89 |
| CDS |
79388 |
79533 |
146 |
| CDS |
79618 |
79726 |
109 |
| intron |
78893 |
78962 |
70 |
| intron |
79125 |
79183 |
59 |
| intron |
79273 |
79387 |
115 |
| intron |
79534 |
79617 |
84 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001842712 |
palmitoyl-protein thioesterase 1 [Culex quinquefasciatus] gb|EDS27414.1| palmitoyl-protein thioesterase 1 [Culex quinquefasciatus] |
8e-67 |
| InterPro |
IPR002472 |
Palmitoyl protein thioesterase |
|
| Gene Ontology(BP) |
GO:0006464 |
protein modification process |
|
| Gene Ontology(MF) |
GO:0008474 |
palmitoyl-(protein) hydrolase activity |
|
| Pfam |
PF02089.10 |
Palmitoyl protein thioesterase |
1.2e-72 |
| Pfam |
PF08812.6 |
YtxC-like family |
0.03 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.00266 |