MidgeBase gene description page [Pn.01678]
Outline
| Gene ID | Pn.01678 |
| Type | Protein coding gene |
| Scaffold | PnScaf1507 |
| Start | 62111 |
| End | 63844 |
| Direction | + |
Sequence
Transcript: 1671 (bp)
ATGGATTTCACTAAAAGAAGCAAGATAAAACCACTGAAAACGCCAGATGATGAGTCACTTGATCAATTTACGCCACACAACTGCATGTTTTACATTCTTCCGCCGCAAAATGACGTGAGTTTGAAAGATTTCGAGGACTTGGCGTTCGAGCGACTAAAGTTGCTAAGGATTTTGGAGCAAGCCGGCCTCCGATATCCAAAGATACAGTCAGAAGAGTGGAAGGAATTTGTGATAAACGAGCTCAACGCAGAAGGGCTAAAATATTTTGTGCGTTTGATAAAAGGTAATGGGAACACGGACCTTGATAAGCAAGCTCGTCGACGGGACTACCTTTCACACTTTATTCTTCGCTTTGCTTACTGCCGCAGTGAGGAGCTTAGAAGATGGTTCGTTGCACGCGAAATGGAGCTGTTCAAGTTCAAATTTTCTGCCCTGAGCCCGACGGAAATAAAGGACTTTATTGAGCTTTACGAAATGGGATATCGACCGATTAGCGATGAGCAAAAAAATGATGTGCGACACGAACTGCAGTGCTCATCAGTCGCGAATGTTGACAGTATTGACTTTTACAAAGTCAATTTCCTTCAAGTCCTCGATCTCGTTCGCATGCGAAAATGCTTTTTGAAGGGCGGATTTGCCTATGTCAGCTCCAATGACTTCAGCTCAATCATAGGCGGACATCATCAGAAGTTTATAGAGAAAGGCCTGATGTCGCACTTGAAACTGCTCCCTGAGTTCGAAAACGACGAGAGAATTGTCGGAATAATCAAAGGTCTGCACACCTCGTACGTCGGCAAGGATTATACCGTCAACAAAGACGCGGACATTCCCATCGAGAGTCTAGATCAACTCGCGATAAAATCATATCCTCTTTGCATGAGAGCGTGCCACGATGGTCTCAGAAAGACTCACCATTTGAAGCACTCCGGCAGACTTCAATACGGTTTGTTTCTCAAAGGCATTGGCGTGACGTTGGAGGATTCACTTCGCTTCTGGCGCGAAGAAATGACGAAGAATATGGAACCTGATAAGTTCGACAAAGCCTATGCTTACGGCATTCGCTACAACTACGGAAAGGAGGGATCGCGAACGAATTGGTCACCGTGGTCGTGCGGGAAAGTAATTGGTACAACGCCGGGAGCGGGAGATGTTGCAGGCTGTCCTTTTAAATTGTGGGATTCGATTGAACTGAGATCAAAACTCGCCAGCTACGGCCTCAACCCACTTGCAGTTCAAGAGGTCACGAGCTATGCCACTAAAGGTCATTTTCAGTTGGCATGCGGCCGCTACTTTGAGGCAGTCCACGAAACACGACTGGACGAAGGCGTTAGTCATCCAAACGGCTATTTCGAAAATAGTCAAATAATCATGGGCACCAGACAGGCAAAGGAGAAGAGCAAGCCTTCATCTCAACAATCTAATTTCAACCACCGTAAGCAGGTTCAAATAAACAAGCAACAGGAATTTAAGCGCAAGATGGAGGCACGAATCAAGGAAGAGAAGGACTTCAATGATGAATTGTGGCATCTGTCGCAGCGCGAAGAGGATCTTCTGAATGAATATAACGCACGGCAAGAGGCGAAAAAGAAGGAAAAAGATGAAATTGCAGAAATTTCTCAAATGGAATGGAATGACGATGACGAGGGAGAAACGACAAAAGTCTCCAATCAA
Protein: 557 (aa)
MDFTKRSKIKPLKTPDDESLDQFTPHNCMFYILPPQNDVSLKDFEDLAFERLKLLRILEQAGLRYPKIQSEEWKEFVINELNAEGLKYFVRLIKGNGNTDLDKQARRRDYLSHFILRFAYCRSEELRRWFVAREMELFKFKFSALSPTEIKDFIELYEMGYRPISDEQKNDVRHELQCSSVANVDSIDFYKVNFLQVLDLVRMRKCFLKGGFAYVSSNDFSSIIGGHHQKFIEKGLMSHLKLLPEFENDERIVGIIKGLHTSYVGKDYTVNKDADIPIESLDQLAIKSYPLCMRACHDGLRKTHHLKHSGRLQYGLFLKGIGVTLEDSLRFWREEMTKNMEPDKFDKAYAYGIRYNYGKEGSRTNWSPWSCGKVIGTTPGAGDVAGCPFKLWDSIELRSKLASYGLNPLAVQEVTSYATKGHFQLACGRYFEAVHETRLDEGVSHPNGYFENSQIIMGTRQAKEKSKPSSQQSNFNHRKQVQINKQQEFKRKMEARIKEEKDFNDELWHLSQREEDLLNEYNARQEAKKKEKDEIAEISQMEWNDDDEGETTKVSNQ
| Type | Start | End | Length |
| CDS |
62111 |
62493 |
383 |
| CDS |
62554 |
63841 |
1288 |
| intron |
62494 |
62553 |
60 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_316421 |
AGAP006387-PA [Anopheles gambiae str. PEST] gb|EAA11427.3| AGAP006387-PA [Anopheles gambiae str. PEST] |
1e-161 |
| InterPro |
IPR016558 |
DNA primase, large subunit, eukaryotic |
|
| InterPro |
IPR007238 |
DNA primase, large subunit, eukaryotic/archaeal |
|
| Gene Ontology(BP) |
GO:0006269 |
DNA replication, synthesis of RNA primer |
|
| Gene Ontology(MF) |
GO:0003896 |
DNA primase activity |
|
| Gene Ontology(MF) |
GO:0016779 |
nucleotidyltransferase activity |
|
| Pfam |
PF04104.9 |
Eukaryotic and archaeal DNA primase, large subunit |
2.4e-72 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB14053-PA |
| D. melanogaster |
FBgn0259676 |
| A. gambiae |
AGAP006387 |
| P. humanus |
PHUM521440-PA |
| P. vanderplanki |
Pv.00334 |
| S. invicta |
SI2.2.0_80078 |
| A. aegypti |
AAEL004698 |
| D. plexippus |
DPOGS214279PA |
| T. castaneum |
TC012678 |
| B. mori |
BGIBMGA005991-TA |
| M. musculus |
ENSMUSG00000026134 |
| C. quinquefasciatus |
CPIJ019440 |
| H. melpomene |
HMEL011405-PA |
| N. vitripennis |
NV10751-PA |