MidgeBase gene description page [Pn.01651]
Outline
| Gene ID | Pn.01651 |
| Type | Protein coding gene |
| Scaffold | PnScaf1499 |
| Start | 26249 |
| End | 27627 |
| Direction | - |
Sequence
Transcript: 1314 (bp)
ATGAGCGAGAAAGTGACAGTGGAGGACCTGAGAAATCACTGCACAGAAAAGTCGGCGTGGATTGCGATTCGCGGAAAAGTCTACGATGTGACCGCCTTCATGAGGCGACATCCTGGAGGCAGGGATGCGCTGCTGCTAGCAATTGGCCGCGATGCGACAGTCGTCTTCGAGACTTATCACGACCTCGAACGGGTGAAAAAAGTCTTGGCGAAAATGCCGCTCGTAGGTCATCTCGTCGACTCAAAAACGCCCTCTTTCAGCGAGGTCAGCCCCTTCCAGAAAGCAATCAATGATAAGGTCCGCAAGCGCTTCAAAGAGGCGCGTCTCGACGCAAAGAACGCACCTGCGGCGTGGGTGACCTACGCGGTCATCTTGATCACGCTTTGGGCGAGCTATTATCAGCAGTTTTTCGGGCTGATGAGTCACAGCCTTCTCTTTCAGACGATCGCCGCGCTTATCAACGGCATCGCGAGCGCGCAGATCGGCCTGCACGTGCTCCACGACTCCTCGCACTTTTCGATCACGCACCGGCCGCTGGTGTGGAAACTTCTCGGCGCCACGCACGACTTCTGCAACGGACTGAGCTTCGTGTGGTGGAGCTACCGGCACGTCTTTGGCCACCATCCATACACGAACATCGTCGACGCCGACCCGGACATTTACGTGGACACGCGCGCGAATTTCCAGAGGATTTTGCGGTTCCAGCCGTGGCGGCATTTCTACAAGTACCAGCACATCTACTCGCCCTTCGTCTACGGCGGCTTGGGCTTCAAGATGCGCTACCAGGACCTCGAGGTGCTTTACGTCAAAAAATCGCGCGGCTCGATTGCCGTCAATCCTTTGACTTTCGGTCAGCACTTGCAGCTCCTTGGTGGCAAGGCTTTCTTCTTGTTCTACCGCCTCGTTCTTCCGGTCTTGCTCGGACATTCTTTCGTGCGTGTGCTCATGCTTCTGCTGTTCTCCGACCTCATGATGTCCTACTTCTTGGCGCTGCCCTTCCAGGCCAACCACGTGGTCGGCGAGGTGCAGCTCCCGTTTCAGCAAACGAGCGACATCGACTGGGCAAAGATGCAGATCGCGACGTCCCTCGACTATGCGATTGATTCGAAAGTCACGCGTTTTGCTGTTGGATCGCTGAACTTCCAGACGGTGCACCATCTCTTTCCCGGCATCCTCCAGCACCACTACCCGCTCATTCACGACATAGTTCGCGATGAGTGCGAGAAAAATGGCGTGCGGTACAACATAAAGGCGAGTCTCTTCGGCGCTCTCAATGCGCACATCCAGCATCTGAGGAACTTGGGCGCGAGAGCG
Protein: 438 (aa)
MSEKVTVEDLRNHCTEKSAWIAIRGKVYDVTAFMRRHPGGRDALLLAIGRDATVVFETYHDLERVKKVLAKMPLVGHLVDSKTPSFSEVSPFQKAINDKVRKRFKEARLDAKNAPAAWVTYAVILITLWASYYQQFFGLMSHSLLFQTIAALINGIASAQIGLHVLHDSSHFSITHRPLVWKLLGATHDFCNGLSFVWWSYRHVFGHHPYTNIVDADPDIYVDTRANFQRILRFQPWRHFYKYQHIYSPFVYGGLGFKMRYQDLEVLYVKKSRGSIAVNPLTFGQHLQLLGGKAFFLFYRLVLPVLLGHSFVRVLMLLLFSDLMMSYFLALPFQANHVVGEVQLPFQQTSDIDWAKMQIATSLDYAIDSKVTRFAVGSLNFQTVHHLFPGILQHHYPLIHDIVRDECEKNGVRYNIKASLFGALNAHIQHLRNLGARA
| Type | Start | End | Length |
| CDS |
26252 |
27426 |
1175 |
| CDS |
27489 |
27627 |
139 |
| intron |
27427 |
27488 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
BAD95486 |
delta5 fatty acid desaturase [Mortierella alpina] |
1e-108 |
| InterPro |
IPR018506 |
Cytochrome b5, heme-binding site |
|
| InterPro |
IPR005804 |
Fatty acid desaturase, type 1 |
|
| InterPro |
IPR012171 |
Fatty acid/sphingolipid desaturase |
|
| InterPro |
IPR001199 |
Cytochrome b5 |
|
| Gene Ontology(BP) |
GO:0006633 |
fatty acid biosynthetic process |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(BP) |
GO:0006629 |
lipid metabolic process |
|
| Gene Ontology(MF) |
GO:0020037 |
heme binding |
|
| Gene Ontology(MF) |
GO:0005506 |
iron ion binding |
|
| Gene Ontology(MF) |
GO:0016717 |
oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water |
|
| Pfam |
PF10901.3 |
Protein of unknown function (DUF2690) |
0.03 |
| Pfam |
PF00173.23 |
Cytochrome b5-like Heme/Steroid binding domain |
4.2e-23 |
| Pfam |
PF14268.1 |
YoaP-like |
0.078 |
| Pfam |
PF00487.19 |
Fatty acid desaturase |
2.5e-33 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.14634 |
| Pn.14635 |
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000024665 |
| H. sapiens |
ENSP00000278840 |
| P. vanderplanki |
Pv.15846 |
| H. sapiens |
ENSP00000439308 |
| H. sapiens |
ENSP00000432206 |
| H. sapiens |
ENSP00000431091 |
| M. musculus |
ENSMUSG00000024664 |
| H. sapiens |
ENSP00000441403 |
| H. sapiens |
ENSP00000405087 |
| P. vanderplanki |
Pv.00716 |
| H. sapiens |
ENSP00000429500 |
| H. sapiens |
ENSP00000322229 |
| M. musculus |
ENSMUSG00000075217 |
| H. sapiens |
ENSP00000278829 |
| H. sapiens |
ENSP00000257261 |
| H. sapiens |
ENSP00000431533 |
| M. musculus |
ENSMUSG00000010663 |