MidgeBase gene description page [Pn.01627]
Outline
| Gene ID | Pn.01627 |
| Type | Protein coding gene |
| Scaffold | PnScaf1472 |
| Start | 26969 |
| End | 27954 |
| Direction | + |
Sequence
Transcript: 627 (bp)
ATGGCAACAAGAAAGAAGGTTCTCCTCAAAGTGATCATCTTGGGCGACTCGTCAGTGGGAAAGACATCGCTAATGAACCAATATGTCAATAAAAGATTCTCCAACCAGTATAAAGCAACTATCGGGGCAGATTTTCTAACAAAGGAAGTAGTCGTCGATGATCGCGTTGTAACAATGCAAATTTGGGATACAGCTGGTCAAGAGAGATTTCAGTCTCTCGGCGTGGCATTTTATCGCGGAGCAGATTGCTGTGTGCTCGTCTTTGACACAACTGCGCCAAACACATTCAAGAACCTCGACTCTTGGCGTGACGAGTTCCTGATTCAAGCGAGTCCCAGAAATCCCGAGCACTTTCCGTTCGTCGTGTTGGGCAACAAAGTAGATTTGGAGAATCGAGCTGTATCAACAAAACGTGCACAGCAGTGGTGCCAATCGAAGAATGATATTCCATATTTTGAGACTTCCGCAAAGGAAGGAATCAACGTCGACATCGCTTTCCAGACGATCGCCAAGAACGCCCTCGCGCAGGAAACCGACGACATGGACATCGCAGGCTTTAATCCGACCATCAGCGTCGGTGCAAACTCAGACTCCACCAACAATAGACCCAACGGCGACTGCTCGTGC
Protein: 209 (aa)
MATRKKVLLKVIILGDSSVGKTSLMNQYVNKRFSNQYKATIGADFLTKEVVVDDRVVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDTTAPNTFKNLDSWRDEFLIQASPRNPEHFPFVVLGNKVDLENRAVSTKRAQQWCQSKNDIPYFETSAKEGINVDIAFQTIAKNALAQETDDMDIAGFNPTISVGANSDSTNNRPNGDCSC
| Type | Start | End | Length |
| CDS |
26969 |
27148 |
180 |
| CDS |
27320 |
27332 |
13 |
| CDS |
27434 |
27639 |
206 |
| CDS |
27724 |
27951 |
228 |
| intron |
27149 |
27319 |
171 |
| intron |
27333 |
27433 |
101 |
| intron |
27640 |
27723 |
84 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001850628 |
ras-related protein Rab-7 [Culex quinquefasciatus] gb|EDS32384.1| ras-related protein Rab-7 [Culex quinquefasciatus] |
1e-100 |
| InterPro |
IPR002041 |
Ran GTPase |
|
| InterPro |
IPR005225 |
Small GTP-binding protein domain |
|
| InterPro |
IPR001806 |
Small GTPase superfamily |
|
| InterPro |
IPR003579 |
Small GTPase superfamily, Rab type |
|
| InterPro |
IPR020849 |
Small GTPase superfamily, Ras type |
|
| InterPro |
IPR003578 |
Small GTPase superfamily, Rho type |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(BP) |
GO:0006913 |
nucleocytoplasmic transport |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(BP) |
GO:0006184 |
GTP catabolic process |
|
| Gene Ontology(BP) |
GO:0007264 |
small GTPase mediated signal transduction |
|
| Gene Ontology(BP) |
GO:0015031 |
protein transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Gene Ontology(MF) |
GO:0003924 |
GTPase activity |
|
| Pfam |
PF08477.8 |
Miro-like protein |
1.5e-17 |
| Pfam |
PF04670.7 |
Gtr1/RagA G protein conserved region |
1.2e-06 |
| Pfam |
PF03205.9 |
Molybdopterin guanine dinucleotide synthesis protein B |
0.031 |
| Pfam |
PF10662.4 |
Ethanolamine utilisation - propanediol utilisation |
0.018 |
| Pfam |
PF00735.13 |
Septin |
0.021 |
| Pfam |
PF00071.17 |
Ras family |
2.3e-56 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
0.04 |
| Pfam |
PF13401.1 |
AAA domain |
0.02 |
| Pfam |
PF00025.16 |
ADP-ribosylation factor family |
6.1e-13 |
| Pfam |
PF01637.13 |
Archaeal ATPase |
0.016 |
| Pfam |
PF01926.18 |
50S ribosome-binding GTPase |
2.7e-07 |
| Pfam |
PF09439.5 |
Signal recognition particle receptor beta subunit |
0.01 |
| Pfam |
PF02421.13 |
Ferrous iron transport protein B |
0.023 |
| Pfam |
PF03029.12 |
Conserved hypothetical ATP binding protein |
0.0032 |
| Pfam |
PF00009.22 |
Elongation factor Tu GTP binding domain |
7.2e-06 |
| Pfam |
PF03193.11 |
Protein of unknown function, DUF258 |
0.044 |
| Pfam |
PF03266.10 |
NTPase |
0.13 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS204401PA |
| A. gambiae |
AGAP001617 |
| M. musculus |
ENSMUSG00000079477 |
| A. aegypti |
AAEL003503 |
| P. vanderplanki |
Pv.01738 |
| H. sapiens |
ENSP00000265062 |
| P. humanus |
PHUM025720-PA |
| N. vitripennis |
NV11487-PB |
| B. mori |
BGIBMGA007712-TA |
| C. quinquefasciatus |
CPIJ009089 |
| T. castaneum |
TC006036 |
| H. melpomene |
HMEL015683-PA |
| D. melanogaster |
FBgn0015795 |
| S. invicta |
SI2.2.0_13124 |
| N. vitripennis |
NV11487-PA |