MidgeBase gene description page [Pn.01607]
Outline
| Gene ID | Pn.01607 |
| Type | Protein coding gene |
| Scaffold | PnScaf1462 |
| Start | 16751 |
| End | 18029 |
| Direction | + |
Sequence
Transcript: 600 (bp)
ATGCTGACACAAGACAACAGTAATAACTACAGTTTAGCCTCAACCAATATCGGAAAGGAAGGCATAATCCGATGCATATTTCTAAGCGAGTTTCATGCGACTGCGGGAAGTAAAATTAGCTGCCAATCGCCGCAAAACTTCATCTCGAAAACCGCCTTCGACCTCATTAATGCCTATATTCTTCCCAAGCGGGAGCTCGAGCGTCAAGTGCTAACAGTCAATACGCTCAACATCAAAATCGTCGGCTACCCAGTGAAGATTGACCACGAAAAATATGCGCGCAATGCCTTCTACTTCAACCTGTGCTTCGTGTGCGATCACTACTGCAGGAGCGTGCAGTACGAGCCGATCGTGAAGAAACTGTCCGAGTTCCTCATCATGATGGAGATGGAAGTGAGCTTCCTGAGCAACGAAGAATATCGCCCGCGAATCCAGTCGATGCTCAACAAAATCATCACAGATCTCAATGAAACGCGCGTGTGTACGATCACCGAGGAAGAAACGACCGTCTTTTTGAAAATTGTGAAAATCGCCGAAGACCCGCCGGAACTAATCAACGACTACCAAGTCCCCGTGCTGCGCAAAGAGTTTGAGAACATG
Protein: 200 (aa)
MLTQDNSNNYSLASTNIGKEGIIRCIFLSEFHATAGSKISCQSPQNFISKTAFDLINAYILPKRELERQVLTVNTLNIKIVGYPVKIDHEKYARNAFYFNLCFVCDHYCRSVQYEPIVKKLSEFLIMMEMEVSFLSNEEYRPRIQSMLNKIITDLNETRVCTITEEETTVFLKIVKIAEDPPELINDYQVPVLRKEFENM
| Type | Start | End | Length |
| CDS |
16751 |
16837 |
87 |
| CDS |
17514 |
18026 |
513 |
| intron |
16838 |
17513 |
676 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001664256 |
hypothetical protein AaeL_AAEL003870 [Aedes aegypti] gb|EAT44769.1| conserved hypothetical protein [Aedes aegypti] |
3e-63 |
| InterPro |
IPR009348 |
Nitrogen permease regulator 2 |
|
| Pfam |
PF06218.6 |
Nitrogen permease regulator 2 |
3.3e-58 |
| Pfam |
PF07792.7 |
Docking domain of Afi1 for Arf3 in vesicle trafficking |
0.0038 |
| Pfam |
PF00152.15 |
tRNA synthetases class II (D, K and N) |
0.098 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA009882-TA |
| P. vanderplanki |
Pv.04672 |
| A. gambiae |
AGAP000438 |
| M. musculus |
ENSMUSG00000010057 |
| P. humanus |
PHUM014780-PA |
| N. vitripennis |
NV12417-PA |
| D. melanogaster |
FBgn0030800 |
| D. plexippus |
DPOGS203338PA |
| T. castaneum |
TC005889 |
| C. quinquefasciatus |
CPIJ019912 |
| H. sapiens |
ENSP00000232501 |
| A. aegypti |
AAEL015393 |
| A. aegypti |
AAEL003870 |
| S. invicta |
SI2.2.0_00420 |
| H. melpomene |
HMEL011469-PA |
| B. mori |
BGIBMGA003860-TA |
| P. vanderplanki |
Pv.03861 |
| D. plexippus |
DPOGS200829PA |
| A. mellifera |
GB12170-PA |
| H. melpomene |
HMEL017934-PA |