MidgeBase gene description page [Pn.01606]
Outline
| Gene ID | Pn.01606 |
| Type | Protein coding gene |
| Scaffold | PnScaf1462 |
| Start | 15787 |
| End | 16413 |
| Direction | + |
Sequence
Transcript: 564 (bp)
ATGAGGATAGAAACGTGTTATTTCTGCTCCAGTAAAATTTATCCAGGACACGGAATGCTTTTCGTCAGAAATGATTGCAAACAATTCAGATTCTGCCGAAAGAAGTGCAGGAAGGCATTCCAGAGAAAGAAGAACCCCAGAAAGGCAAAATGGACAAAGGCATATCGCAAATTGGCCGGAAAGGAACTCACAATCGACCCGTGCTTTGAATTCGAAAAACGCAGAAATGTTCCAGTCAAATACGACCGCGAGCTGTGGACGAAAACAATCGATGCAATCAAAAGAATTAACGAAATCAAAGAGCGCCGCGAAAGGCACTTTGTCATGGAGAGATTACGCAAAGGCACACAGCGAGAAATCCATAATGACATTCGCGACGTGCAGAAGAATTTGTCGCTTATTCGTGCGCCTGAAGGAATCCGAAAGAAGGACACCGAGGAGGAAGAGGTCAAGAACGAATCCATGGAGATGGACGAGGAGGAGATCGAGTACATGCCAGCTCGCGAGATGGAGAAGAAGCTCGAGCGCGGCGACATGGACATCGAAACTGTGAAAATGAAGAAC
Protein: 188 (aa)
MRIETCYFCSSKIYPGHGMLFVRNDCKQFRFCRKKCRKAFQRKKNPRKAKWTKAYRKLAGKELTIDPCFEFEKRRNVPVKYDRELWTKTIDAIKRINEIKERRERHFVMERLRKGTQREIHNDIRDVQKNLSLIRAPEGIRKKDTEEEEVKNESMEMDEEEIEYMPAREMEKKLERGDMDIETVKMKN
| Type | Start | End | Length |
| CDS |
15787 |
15867 |
81 |
| CDS |
15928 |
16410 |
483 |
| intron |
15868 |
15927 |
60 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001656187 |
60S ribosomal protein L24 [Aedes aegypti] gb|EAT35117.1| 60S ribosomal protein L24 [Aedes aegypti] |
1e-67 |
| InterPro |
IPR023441 |
Ribosomal protein L24e domain |
|
| InterPro |
IPR023442 |
Ribosomal protein L24e, conserved site |
|
| InterPro |
IPR000988 |
Ribosomal protein L24e-related |
|
| InterPro |
IPR011017 |
TRASH |
|
| InterPro |
IPR024546 |
Ribosome biogenesis protein RLP24 |
|
| Gene Ontology(BP) |
GO:0042254 |
ribosome biogenesis |
|
| Pfam |
PF01246.15 |
Ribosomal protein L24e |
5.2e-27 |
| Pfam |
PF04874.9 |
Mak16 protein C-terminal region |
0.091 |
| Pfam |
PF06467.9 |
MYM-type Zinc finger with FCS sequence motif |
0.71 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB19165-PA |
| N. vitripennis |
NV14599-PA |
| C. quinquefasciatus |
CPIJ001214 |
| P. humanus |
PHUM307510-PA |
| M. musculus |
ENSMUSG00000032215 |
| D. plexippus |
DPOGS215412PA |
| H. sapiens |
ENSP00000260443 |
| A. gambiae |
AGAP001545 |
| A. aegypti |
AAEL012681 |
| H. melpomene |
HMEL017432-PA |
| T. castaneum |
TC012999 |
| S. invicta |
SI2.2.0_15217 |
| B. mori |
BGIBMGA012373-TA |
| P. vanderplanki |
Pv.04671 |
| D. melanogaster |
FBgn0037899 |