MidgeBase gene description page [Pn.01555]
Outline
| Gene ID | Pn.01555 |
| Type | Protein coding gene |
| Scaffold | PnScaf1410 |
| Start | 16584 |
| End | 17938 |
| Direction | - |
Sequence
Transcript: 1158 (bp)
ATGCAGCATCAGACTCAAAAACTTGACATTCAAAGCAAAGACAAAGATGAGGCGAGCGACAGCCACTCGACGGAGCAGCCCCTCGACTTGAGCGTGGCGCGAAAGAAACACCGCTCGCACCAGTCGCCGACGCGGAGTCCATTAGCGATGACGGCCACGTCAGCAGCCGCCGCAGCGGAAATGAGCGATGAGCACGAGACGTCGCAGTCGCCGAAGATCGACGTGCAGAAGATCGAGGCGTCGCCGTTGCAGACGCACAGCGACGAGCAGCAGGCAAGTCGATCGCCGTCACTCTCACCTCGCTCCTGCTCACCACCCACCACACACACATCCGCACCGTCGTCGCCGGGACCTCAGCCGCACCAGATGGCCTATCCGCGACCGATCCACCCGCTCCTCCTCGACGCCATGTACCGGCCCGGCGCCCTCAACCCCTTTCAGCGTCCCTTTCCTTTTTTAGGGCCGAACTTTCGCGCCGGCTTCGATCTCCTTAGCCGCAACGGCGGCAGCTTTCCCGCGAAGACATTCCACGAAGCGCTGATGTCGGCCGGCGGACTTGCCGGCACGCCCACCGGCGCCTCCCTGCTCGGCGCCACCGGCGGCGGTGGTGGTGGCGGTGGCGGTGGCGGCAAGGTGAAGGACCGCTACAGCTGCAAGTTCTGCGGCAAGAACTTCCCGCGCTCGGCGAATCTCACGCGCCACTTGCGCACGCACACGGGCGAGCAGCCGTACAGCTGCAAGTACTGCGAGCGCTCGTTCAGCATCTCGAGCAACTTGCAGCGCCACGTGCGCAACATCCACAACAAGGAGCGGCCGTTCAAGTGCCCGCTCTGCGAGCGCTGCTTCGGGCAGCAGACGAACCTCGACCGGCATCTGAAGAAGCACGAGGCGGACGCGGCGGGAATCGGCGTCGGACTCGCCGATTCGCCCTCCTCCAACGAGGCCGAGCGCGAGGACTCGTACTTCGACGAGATCCGGCAGTTCATGGGAAAGGTGACGTACAGCGGCGCGCCGCATCTGTACGCTCCGCTGGCGGTCGAGGGCGACCTGGACGAGGCGGCCAGCGGCAGTAGCGACAACGACTTAATCAACATCGAGCACGAGCACAGCGACAAAGACACAATCAATAACAACAACGATCGAATCGAGGTGACAACA
Protein: 386 (aa)
MQHQTQKLDIQSKDKDEASDSHSTEQPLDLSVARKKHRSHQSPTRSPLAMTATSAAAAAEMSDEHETSQSPKIDVQKIEASPLQTHSDEQQASRSPSLSPRSCSPPTTHTSAPSSPGPQPHQMAYPRPIHPLLLDAMYRPGALNPFQRPFPFLGPNFRAGFDLLSRNGGSFPAKTFHEALMSAGGLAGTPTGASLLGATGGGGGGGGGGGKVKDRYSCKFCGKNFPRSANLTRHLRTHTGEQPYSCKYCERSFSISSNLQRHVRNIHNKERPFKCPLCERCFGQQTNLDRHLKKHEADAAGIGVGLADSPSSNEAEREDSYFDEIRQFMGKVTYSGAPHLYAPLAVEGDLDEAASGSSDNDLINIEHEHSDKDTINNNNDRIEVTT
| Type | Start | End | Length |
| CDS |
16587 |
17699 |
1113 |
| CDS |
17894 |
17938 |
45 |
| intron |
17700 |
17893 |
194 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001862948 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS37801.1| conserved hypothetical protein [Culex quinquefasciatus] |
2e-88 |
| InterPro |
IPR015880 |
Zinc finger, C2H2-like |
|
| InterPro |
IPR007087 |
Zinc finger, C2H2 |
|
| InterPro |
IPR013087 |
Zinc finger C2H2-type/integrase DNA-binding domain |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF12756.2 |
C2H2 type zinc-finger (2 copies) |
0.0061 |
| Pfam |
PF00096.21 |
Zinc finger, C2H2 type |
8.4e-18 |
| Pfam |
PF02892.10 |
BED zinc finger |
1.6e-06 |
| Pfam |
PF02748.10 |
Aspartate carbamoyltransferase regulatory chain, metal binding domain |
1.1 |
| Pfam |
PF07975.7 |
TFIIH C1-like domain |
8 |
| Pfam |
PF13913.1 |
zinc-finger of a C2HC-type |
1.7 |
| Pfam |
PF12874.2 |
Zinc-finger of C2H2 type |
0.074 |
| Pfam |
PF12171.3 |
Zinc-finger double-stranded RNA-binding |
7.4e-07 |
| Pfam |
PF00130.17 |
Phorbol esters/diacylglycerol binding domain (C1 domain) |
0.63 |
| Pfam |
PF12907.2 |
Zinc-binding |
0.041 |
| Pfam |
PF05793.7 |
Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) |
2.7 |
| Pfam |
PF09237.6 |
GAGA factor |
8.6e-05 |
| Pfam |
PF13465.1 |
Zinc-finger double domain |
4.4e-18 |
| Pfam |
PF13894.1 |
C2H2-type zinc finger |
9.8e-13 |
| Pfam |
PF13912.1 |
C2H2-type zinc finger |
0.0075 |
| Pfam |
PF05129.8 |
Transcription elongation factor Elf1 like |
1 |
| Pfam |
PF01428.11 |
AN1-like Zinc finger |
7.9 |
| Pfam |
PF13909.1 |
C2H2-type zinc-finger domain |
0.24 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000039410 |
| H. sapiens |
ENSP00000425796 |
| D. plexippus |
DPOGS200421PA |
| P. humanus |
PHUM496070-PA |
| H. sapiens |
ENSP00000417899 |
| H. sapiens |
ENSP00000421400 |
| B. mori |
BGIBMGA008996-TA |
| A. aegypti |
AAEL017229 |
| H. sapiens |
ENSP00000394302 |
| A. gambiae |
AGAP008232 |
| H. sapiens |
ENSP00000376493 |
| H. sapiens |
ENSP00000422504 |
| H. sapiens |
ENSP00000426975 |
| H. sapiens |
ENSP00000270722 |
| H. sapiens |
ENSP00000420466 |
| H. sapiens |
ENSP00000367651 |
| C. quinquefasciatus |
CPIJ008060 |
| P. vanderplanki |
Pv.11045 |
| H. melpomene |
HMEL003726-PA |
| A. mellifera |
GB12947-PA |
| H. sapiens |
ENSP00000367643 |
| S. invicta |
SI2.2.0_13327 |
| H. sapiens |
ENSP00000419770 |
| H. sapiens |
ENSP00000419995 |
| D. melanogaster |
FBgn0045852 |
| M. musculus |
ENSMUSG00000027684 |
| C. quinquefasciatus |
CPIJ801958 |
| N. vitripennis |
NV11692-PA |
| H. sapiens |
ENSP00000405253 |
| T. castaneum |
TC006417 |
| H. sapiens |
ENSP00000264674 |
| H. sapiens |
ENSP00000407968 |
| H. sapiens |
ENSP00000420048 |